Oncorhynchus kisutch (coho salmon): 116352981
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Entry
116352981 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116352981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
116352981
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116352981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
Motif
Other DBs
NCBI-GeneID:
116352981
NCBI-ProteinID:
XP_031669215
Ensembl:
ENSOKIG00005046013
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQEETVLQKDTYIESNLCSFP
HYLLPDTNIVLSQIDILEDPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTF
TNEHHRETYIEREQGESANDRNDRAIRISTKWYSDHLNNTPTDKRLKVVLLTNDRGNKEK
AEEFGLLTYRCEEYVKSLIANPELVDRLALTNDDKNEITSSKVLFPEHLPLSRIQSGIKS
GTFQQGTFRASRDNYLEATVFVHGEGDDSTEVLIQGLQNLNRAVHQDLVAVEILPLNQWV
APSSVVLQDEGPKEDDVTEEEEEAELKSGPSGAASRKPTGRVVGIIKRNWRPFCGMLFLS
QIKEATRHLFTPADRRIPRIRIETRQAATLAGQRIMVAVDGWPKHSRYPNGHFVRSLGSA
GDKETETEVLLLEHDVPHQDFSQAVLSFLPKMPWNITEEDMAVREDLRNLTVCSVDPPGC
TDIDDALHCRDLPNGNQEVGVHIADVSHFIRPGNAMDLEAANRGTTVYLTGRRIDMVPEL
LSSNLCSLRSSVERLAFSCIWEINDKAEIVKTRFTKSVINSKASLTYAEAQMRIDDANMN
DDTTKSLRGLNRLAKILKKRRIEKGALTLSSPEVRFHIDSETHDPIDLQTKELKETNSMV
EEFMLLANISVAQKIYDEFSECALLRKHPAPPPSNYDILNKAAKSKDMVIHTDSAKALAD
SLDAAQVDGFPYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRYS
DIIVHRLLAVAIGADSTYPDLMDKHKQSALCNNLNYRHKMAQYAQRASVAYHTQLFFKSR
GILNEEGFILFVRKNAIIVLIPKFGLEGTVFFENKDKPSPKLIFNEEAPSLTVEGHSFNM
FDKVKVTISLDASNVQHQKIRMSLVEPVISGVSVAPSEPEPEVKRAKLDR
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaatcaaaaactttcgtaaagaaaacccgatcaggcgggatcatgaaaatagtc
cgtgagcattacctgcgagacgatatttggtgcggaagtgaagtttgtacagaatgcaag
caagaagagactgtgttgcagaaagacacttacattgaaagcaacttgtgttctttccca
cactatttactcccagacacaaatattgtgttgagccagattgatatcctggaggatccc
ttgatcaagaacgtgatcattctgcagactgtactccaagaggtccgccacaggagcgct
cccatctacaagcggttgaaagacatccttcacgacaaggaaaaacacttttacactttc
actaacgaacatcacagagaaacgtatatagagagagagcagggggaaagcgccaacgat
cgtaatgacagagccatccgcatatctaccaagtggtacagcgatcacctgaacaacacc
cccacggacaagaggttaaaggttgttttgctgaccaatgaccggggcaacaaggagaaa
gcagaggagttcggcctgctcacatacagatgtgaggagtacgtcaagagtctgatagcc
aaccctgagctggtggatcgactggctttgaccaacgatgacaagaatgagatcaccagc
agtaaggtgttgttcccggagcacctgcccctgtctaggatccagtctgggattaagagt
gggaccttccaacagggaacattccgggctagcagagacaactacctggaggctactgtg
tttgtccacggagaaggagatgacagtacagaggttctgatccaaggcctgcagaacctg
aacagggctgtccatcaggacctggttgctgtggagatcctgcctctgaaccaatgggtg
gctccgtcctctgtggtgctgcaggacgaggggcccaaggaggatgatgtcacagaggag
gaggaggaggcagagttgaagagtggtccgtctggggcggcgtcacgaaagcccacaggc
agggtggtgggcatcatcaagaggaactggagacccttctgtggcatgctcttcctgtcc
caaatcaaagaggcgacccgtcacctcttcaccccagccgaccgccgtatccccaggatc
cgtatagagacgcgccaggcggccacgttggcaggacagaggatcatggtggccgtcgac
ggctggcccaagcactccagataccctaatggccattttgttcgtagtctgggaagtgca
ggggacaaggagacggagacggaggtgctactgctggagcatgatgtccctcaccaggac
ttctcacaggccgtcctcagtttcctccccaagatgccctggaacatcacagaggaggac
atggctgtgagagaggacctgaggaacctgaccgtctgcagtgtggatcctcctggctgt
acggacatagatgatgctctgcactgtagagacctgcccaatggaaaccaagaggttggt
gtccacattgctgatgtgagccacttcatccggccaggcaacgctatggacctggaggct
gctaacagaggaactacagtctacctgactggaaggaggatcgacatggttcctgaactg
ctgagctccaacctgtgttctctaaggtccagtgtggagaggctggccttctcttgtata
tgggagatcaacgacaaggctgagatagtcaagaccagattcactaaaagtgtcatcaac
tccaaggcctcgctgacgtacgccgaggcccagatgaggattgatgacgccaacatgaat
gatgacaccaccaagagcttacgaggcctgaacagactagccaagatcctgaagaaacgg
aggatagagaaaggtgcgttgactctctcctcgcccgaggttcgcttccacatcgacagt
gagactcacgaccccatagacctacagaccaaggaactcaaggagaccaactcgatggtg
gaggagttcatgttgctggccaacatctcagtagctcagaagatttatgatgagttctca
gagtgcgctcttctcaggaagcaccctgcccctcctccatccaactacgacatcctcaac
aaggctgccaagtctaaggacatggtgatccacacggactcggccaaggctctagctgac
tctctggacgcggcccaggtggacggcttcccttacttcaacaccttgctgcgtatccta
gcaacacgctgcatgatgcaggctgtgtacttctgctccgggatggacagtgacttccac
cactatggactggcctctcccatctacacacacttcacctcacctatcagacgatactct
gacatcatcgtgcatcggctgctggctgtagccattggagcagacagcacttacccagac
ctgatggacaaacacaagcagtctgccctctgcaacaacctcaactacagacacaagatg
gcccagtacgcacagcgagcctctgtagcctaccacacacagctgttcttcaagagcaga
ggcatcctgaacgaagagggcttcatcctgtttgtgaggaagaacgccatcatcgtcctc
atccctaagtttggtctggagggaacggtgttctttgagaacaaagataaacccagcccc
aaactgatcttcaacgaagaggctcctagtctgacggtggagggccactccttcaacatg
tttgacaaggtcaaagtgaccatcagtctggatgcgtccaacgtccagcaccagaagata
aggatgtccctggtcgaacctgtgatctctggagtgagtgtggcaccgtctgaaccagaa
ccagaggtcaagagagctaaactggaccgttga
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