Oncorhynchus kisutch (coho salmon): 116355422
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Entry
116355422 CDS
T09179
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116355422
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116355422
NCBI-ProteinID:
XP_031654982
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All DBs
Position
LG20:complement(47883975..47906943)
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AA seq
1063 aa
AA seq
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MSAGGLGSVTVSTVTRSNYSSSAGAGSGGVKRGRAQGSASSAVSFSPTPTERKSMTTTMT
ARSMGYEGRSNGNSSPEYTRREYAASTPTRGRSHSRENEIRCRLQSASPTAKRWTELEDV
KRLLKGSRSCSISPPRSPTSTLPIPRKARVETRTMPNSSQSGQYDSATLDLGMPSYMWSG
PTAGGYGYHSNAINLSPTSTLQHSPITLTGLQNNLALSSTSMNSGLSASSTVAPSSPTSD
EAKEYKFMLLEKENAPVKKETERLVMAKDTGKQFSSAATAIAYSEDSLKKEKKKVSSFVE
TATARTTEANAGSLTKVSTKDKATYPEMRKDESGGGLGFWSCCSWWKWLLGLLLGLLLLL
GLLLGLIALAEEVRRLKARVDALEQASSSSSTSSTSSTTLLRSDNGINLGVAAGAGPGSA
NGRGQDSVALQRAVQQIVRTELQSATVRATLAHSMKGARGEPGTKGDQGGPGVKGDNGFP
GLPGPPGQMGHSGQEGTRGPKGNAGEAGAEGSPGQRGREGPTGSRGEPGPPGFGEKGDKG
SPGEPGGPGPAGTAGPVGPKGSVGGQGATGIPGDPGQKGLPGPDGTKGSKGPAGAPGADG
EKGSRGDKGSDGLPGPRGPAGPPGDAGLPGIPGLQGPPGIPGNPGQPGGKGEAGEPGRII
NAGNSVAIPGPPGIPGHAGVAGSPGLSGPVGPAGLPGTPGPRGEKGEEGEKGDQGKPGIT
DMHLWLVFLAHLALQGPQENQVRVPQVLKVLKESQVYQVLVCPAPEEIRESQVASCPTQE
PSSLGHQDLLAQLAFRDHQVTQVSPVYQEFPEIPVSVGFPGPQGQPGGPGPEGDSGLPGP
QGPEGPEGQPGPKGEAGVPGAPGIPGYSSGGSSRSSPGAPGPPGPPGAPGRDGPPGSGSG
TPDVRQYITEYLKSDGVREYMSGPPGPPGVPGPPGGGSVESVDDLASRVIAYIQSEEVRR
YVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGRVLNLMNGKESLCHSHMLNTEASWALRG
LLVHLVFQALLALKALPVLQDRPPTAALDTGWRRSRTTYRVMV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccggcggcttgggctctgtgaccgtttccacggttaccaggtccaactacagc
tcctcggcaggggcgggttcaggaggcgtgaagaggggcagggcacaggggtctgcatcc
tctgctgtcagcttctcccccacccccacggagagaaagagcatgaccaccaccatgacc
gcccgctccatgggctacgaaggaagatccaatggaaactcatctccggaatacacaagg
agagaatatgctgccagtacacccaccagagggcggagccacagtagagagaatgagatc
agatgcagactgcagagtgcctctcccacagccaaaagatggacggagctggaagacgtg
aagcggctgctgaaggggagtcgctcctgcagcatcagcccacctcgctcccccaccagc
accctccctatccccaggaaggcccgcgtagagaccagaaccatgccaaacagctcccag
tcaggccagtacgacagtgccaccctggacttaggaatgccttcctacatgtggtcaggc
cccacggctggaggctatggttaccacagcaacgccatcaacctgtcccccacctccacc
ctccaacactcacctatcacactcacagggcttcagaacaacctggccctcagctctaca
tccatgaactctggactctctgcctctagcactgtggcgcccagcagtcccaccagtgac
gaggccaaagaatacaaattcatgctgctggagaaagagaacgctcccgtcaaaaaggag
acggagagactcgtcatggccaaagataccggcaaacagttctcctctgctgccactgct
attgcctattctgaggactcactgaagaaggagaagaagaaggtgtccagctttgtggag
acagctacagccagaaccacagaagctaacgctggatccttgacgaaagtgtcaacgaaa
gacaaagcaacctatccagagatgcgtaaggacgagtctggaggaggtctgggcttctgg
tcctgctgctcctggtggaagtggttgctgggcctcctgctgggtcttctgctcctcctg
gggctcctcctgggactcatcgccctggccgaagaagtcagacgtcttaaagctcgtgtg
gatgccttggaacaagcctccagctcttcctcaacctcctctacctcctctaccacactg
ctccgctctgataatggtatcaatctgggagtggcagcaggagcaggtccaggatcagct
aatggacgaggccaagactctgtagctctgcaaagggcggtacagcagatagtcaggact
gagctgcagtccgctactgtacgagcaacacttgcacactcaatgaaaggagcgagagga
gagcctgggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccct
ggcctaccaggtcctccaggtcagatgggccacagtggacaggagggcacgaggggacct
aaaggaaatgcaggtgaagctggtgcagagggctccccaggccagaggggccgagaagga
ccaacgggatcacgtggagagcctggtcctccagggtttggagagaaaggggacaaaggt
tctcctggtgaacccggaggccccggacctgctggcactgctgggcctgttgggcctaaa
ggatcagtgggtggtcagggtgctacaggtatcccaggtgacccaggtcaaaaaggactt
ccaggaccagacggaacaaagggatccaaaggacccgcaggtgctcccggggctgacggt
gaaaaaggctctagaggtgacaagggatcggatggattaccaggtccaagaggaccagca
ggacctccaggagatgcaggcctcccaggcattcccgggcttcaaggtccaccaggtata
ccaggtaatccaggtcagcctggaggtaaaggtgaagctggagaacctggtagaatcatc
aatgcaggtaattcggttgccatccccggacctccaggcatccccggacacgctggtgtt
gccggatcccctggactctcaggtcctgttggccctgctggtcttcctgggacgcctggt
cccaggggagaaaagggagaggaaggagagaagggagatcagggaaagcctggtattact
gacatgcacctgtggctagtcttcctggcccacctggccctccagggcccccaggagaac
caggtaagggtcccccaggtcctgaaggtcctcaaggagagccaggtgtaccaggtgttg
gtgtgcccggcccccgaggagataagggagagccaggtagcttcgtgcccaactcaggaa
ccttcttcgctgggccaccaggacctgctggcccaactggccttccgggatcaccaggtg
acccaggtcagcccggtttaccaggagttcccggagatcccggtgtcggtgggtttccct
ggaccccagggacaacctgggggtccaggaccagaaggggacagtggacttccaggtccc
caaggtccagagggccccgaggggcaaccgggtccaaaaggtgaggctggcgttccaggt
gctccaggaatccctggctactccagtggtggatcatccaggagttcccctggagcgcca
ggtccaccaggacctcccggggctcccggccgcgatgggccacctgggtctgggtctgga
acaccggacgtccgccaatacatcacagaatacctcaagagcgatggcgtcagggagtac
atgtcgggacctccgggtcctcccggtgtaccggggccccctggtggtggatcagtggag
tccgtggacgaccttgctagtcgcgtcatcgcatacatccagagtgaggaagtgcgacgc
tacgtcatcggtccccctggccctgctggtcctcctggcatcccagggatcccatggaga
ggaggctatggctttaatacccatgaggtggctggacgagtcctcaatctaatgaatggt
aaggaatcactgtgtcacagccatatgctgaatacagaggcatcttgggcgctcaggggc
ctcctggtccacctggtgttccaggccctgctggccctcaaggccctgccggtccttcag
gacaggccccctacagcggctctggatacaggctggaggaggtcaaggactacatacaga
gtgatggtataa
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