Oncorhynchus kisutch (coho salmon): 116359032
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Entry
116359032 CDS
T09179
Name
(RefSeq) exosome complex component CSL4-like isoform X1
KO
K07573
exosome complex component CSL4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116359032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
116359032
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116359032
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116359032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
SPK
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
116359032
NCBI-ProteinID:
XP_031667552
LinkDB
All DBs
Position
Unknown
AA seq
217 aa
AA seq
DB search
MSPMKLCVPGDRLCSTEDCMPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDRVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVSISSIFLFPLLSGAQM
VSISSICLFPSSQEPRWCLSVVYFCFPPLRSPDGVYQ
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgataggctatgcagcacagaagactgtatg
cccggtactggggtgtacctacgacacggctacatatactcctcgctagcaggctacgta
ctcaggaagaacgaaggagaggagctaccagtcatctcggtggtgagagaaaccgaggct
cagctactaccagatgtaggagccatagtgacctgtaaggtgaccagtatcaaccccagg
tttgccaaggtccacatcctctacgttggttccacaccactgaaggaccgttttagagga
accatcaggaaagaagatgtacgagcaacagaaaaagacagggtggagacatataaaagc
ttccgtcctggagacatcgtcctggctaaagtcatctccctgggagacgtccagtccaac
tacctgttgaccacagcagagaacgagctgggggtggtggtagcccacagtgaagcagga
gcccagatggtgtctatcagtagtatatttctgtttcccctcctctcaggagcccagatg
gtgtctatcagtagtatatgtctgtttccctcttctcaggagcccagatggtgtctatca
gtagtatatttctgtttccctcctctcaggagcccagatggtgtctatcagtag
DBGET
integrated database retrieval system
