Oncorhynchus kisutch (coho salmon): 116360592
Help
Entry
116360592 CDS
T09179
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oki03016
]
116360592
Enzymes [BR:
oki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116360592
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116360592
Prokaryotic type
tRNA splicing ligases
116360592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
116360592
NCBI-ProteinID:
XP_031671338
Ensembl:
ENSOKIG00005045670
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIQVNDRQLACARIFS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVCD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatttggacaagattgacaagaactgctgg
cgaatcaagaaaggtttcgtcccaaatatgcaggtggaaggagtgttttacgtcaacgag
tccctggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggttttggt
gggtttctccctgccatgaaacagattggaaacgttgcagctctgccgggtatagtccat
aagtccatcggcctgccagactgccactcagggtatgggttcgccatcggaaacatggct
gccttcgacatgagcgaccccaacgctgtcgtatccccaggtggtgtggggtttgatatt
aactgtggagtgcgtctactaaggaccaacctagacgagggagacgtccagcctgtcaag
gagcagctggctcaggccctgtttgaccacatccctgtaggagtcggctccaagggagtc
atccctatgaccgccaaggatctagaggaggctctagagatgggagtggactggtccctg
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggccttcctcagctaggt
actctgggggcagggaaccactacgctgagatccaggtggtggatgagatctataatgac
tatgctgctaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagggggctgggccaccaggtggcgacagatgccctggttgccatggagaaggcg
atgaagcgagacaagatccaggtgaacgatcgtcagctggcgtgcgcccgtatcttttca
gaggagggacaagactacctgaaaggaatggccgccgccggcaactatgcctgggtcaac
cgttcctctatgaccttcctcacacgacaggcgtttgccaaggtgttcaccaccactcct
gatgacctggacatgcatgtgatctatgacgtgtctcataacatcgccaaggtggaggaa
cacatggtagatgggaaacagaagactctactgctgcatcgcaagggatccacacgggcc
ttccctccacaccaccccctcatccctgtagactaccagctgacaggtcagcctgtgttg
atcgggggcacgatgggcacctgcagttacgtcctgacgggcacagaacagggcatgacg
gagaccttcggcaccacctgtcacggcgcgggtcgggctctgtctcgggccaaatcccgc
aggaacatcgacttccaggacgtgttggacaagctggcagacaagggtatcgccatcagg
gtggcttcgcccaaactagtcatggaagaggctccagagtcgtacaaaaacgtgtgtgat
gtcgtcaacacgtgtcacgatgctggaatcagcaagaaagccatcaaactacgacccatc
gctgtgatcaagggataa
DBGET
integrated database retrieval system
