Oncorhynchus kisutch (coho salmon): 116365825
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Entry
116365825 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oki04040
]
116365825
Ion channels [BR:
oki04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116365825
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
FmiP_Thoc5
eIF-3c_N
Motif
Other DBs
NCBI-GeneID:
116365825
NCBI-ProteinID:
XP_031674062
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
SSGLTLPAPYYQPEEDDERPFIWSLAQDNGIMSCGDVPGPEGGGKDLLSGQGGLPTTASP
WGSSPNTSHSSASAVGLCINWNQYYTRCHTGHNNPXQGAINFDNIVYAWIVIFQVITLEG
WVEIMYYVMDAHSFYNFIYFIFLIIIGSFFMINLCLVVIATQFSETKQREHQLMQEQRAQ
CLSSSTLASLHEPGDCYEELFQLVCHMLRKARRRSVALYNQLRGRPLPPPPTRGRGRGGG
RGGGSANGGERHHLRQPRQSPCPHQSKLDPVHSSQPLGNSIALAVPQNTEDCPQCAAALS
LRQGAGAVGDSANGEEEEGAVEETDREENHLEEKAEEGEGVKKKRKRRSCFGHCKDMWDE
MRKKLWGIVESKYFNRGIMIAILINTISMGIEHHNQVNILFSSILSIFDISLSYSSILGM
HIFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNMVLYNGMASTSPCAALY
FVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSEDDRSSCNFDENSDKLKDSLHLSDP
KLCTLTPNGHLDLSPTPTGLYTADRLTFALGSRKNSVISLGRANLEGRVNLEGRALSLQM
AGVGGSSSLYHNWGRPASQTQAMWGRRSSWNSLGRPSRALGLGLGVGGGGSLRSRSPHAT
HPAEQESLLSPTHPPPHLTHLPPLLALNFVPRRDRRALSLELPELLQVPGTPLASMLPYP
RKKSFSSGLVGGGPGGEHQDCNGKAPSAQLQLQLQLPPHPHPHPQLLTEVFPQVNTRKDR
EDLDDDIDYSLCFRIQKMMEVYRPEWCETREDWSVFLFSPQNRFRRVCQSIIAYKMFDYV
VLAFIFSNCITVALERPKIMQGSLERVFLTISNYVFTAIFVAEMTLKVVSMGLYIGEQAY
LKSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVE
TLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGPDVKNITNKSDCLQANYKWV
HHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGVDQQPVINNSPWMLLYFISFLPH
RQFLVLNMFVGVVVENFHKCRQNQEVEEAKRREDKRRRRMERRGGVRERQEEEAQKIPYY
ASYSPLRLWIHTLCTTYYLDLFITFIICINVITMSLEHYSQPRSLDLVLKYCNYFFTSTF
VLETLLKLTAFGFRRFFKDR
NT seq
3664 nt
NT seq
+upstream
nt +downstream
nt
ttcgtcaggtctgaccctacccgccccttactaccagccggaggaggatgacgagcgccc
cttcatctggtctctggcccaggataacgggatcatgtcgtgtggtgacgttcccggccc
ggagggaggggggaaggacctgctgtctggacagggaggattgcctaccaccgccagtcc
ctggggctcatccccgaacactagtcacagttccgccagtgcagtgggtctctgtatcaa
ctggaaccagtactatactagatgtcatactggacataataatccancacaaggggcgat
caacttcgataacatcgtatacgcctggattgttatcttccaggtgatcaccctggaagg
ctgggtagagatcatgtactatgtaatggatgctcactccttctacaacttcatctactt
catcttcctcatcatcattggctcgttcttcatgatcaacctgtgtctggtggtcatcgc
cacccagttcagtgagaccaagcagcgagagcaccagctgatgcaggagcagcgggccca
gtgcctgtcctcctctaccctggccagcctgcatgaaccgggggactgctacgaagagct
cttccagctggtctgccacatgctgcgcaaggcccgcaggaggtctgtagccctgtataa
ccaactgagaggaaggcctctgccaccaccgcccactagagggagaggaagaggaggagg
aagaggaggagggagtgcgaacggaggggaaaggcatcacctgaggcagccacgccaatc
tccctgtcctcaccaaagcaagctggacccagtccacagctcccaacccctgggcaactc
catcgccctggccgtccctcaaaacacagaggactgccctcagtgcgctgcggcactgtc
actcaggcagggggcgggagctgtgggcgactcggccaatggggaggaggaggagggggc
tgtggaggagacggacagggaggagaaccacttggaggagaaagcggaagagggggaggg
agtgaagaagaagaggaagaggaggtcgtgttttggacactgtaaggacatgtgggatga
gatgaggaagaaactttggggcatcgtggagagcaaatacttcaatagaggaatcatgat
cgctattctcatcaatactatcagcatggggatagaacatcacaaccaggtaaatatact
attctcatcaatactatcaatttttgacatatctctgtcctattccagtatcctggggat
gcacatctttggctgtaagttcagtctgaagacagacactggagacactgttcctgacag
gaagaactttgactctctactgtgggccattgtcactgtgtttcagattctgactcagga
agactggaacatggtgctgtataatggaatggcctccacctctccctgtgctgctctcta
ctttgtggctctaatgacctttggcaactacgtcctcttcaacctgctggtggccatctt
ggtagagggctttcaggctgagggggatgccaaccggtcgtactccgaagacgacaggtc
ctcatgtaactttgacgagaactctgacaagctgaaggactctcttcatctctctgaccc
taagctctgcaccctaaccccaaacggtcacctggacctgtccccaacgcccacgggtct
gtacacggccgacaggctcactttcgctctgggctcacgcaaaaacagtgtcatctctct
gggcagggctaacctggagggcagggttaacctggagggcagggctctgtcactgcaaat
ggctggtgtcggggggagcagctccctgtaccacaactggggccgccctgcctcccagac
ccaggcaatgtggggccggcggtccagctggaacagcctgggtcgcccctcccgagcctt
gggcctgggattgggggtaggaggagggggtagcctgcgctcccgcagcccccacgccac
ccacccggccgagcaggagtccctcctctcccccactcaccctcctccacacctcaccca
ccttcctcccctcctggccctaaactttgtcccgcggcgggaccgccgggcgctgtcctt
ggagctgccggagctcctccaggtcccggggacccccctggcgtcaatgctgccttaccc
caggaagaagagcttctccagtgggttggttggtggagggcctgggggggagcaccagga
ctgcaatgggaaggccccatcagcccagctccagcttcaacttcagctaccgccacatcc
acatccacatccacagctactgacagaggtgttccctcaggtcaacacacgcaaggacag
agaggacctggacgatgacatcgactatagtctgtgtttccgtatccagaagatgatgga
ggtgtacaggccagagtggtgtgagaccagagaggactggtctgtcttcctcttctctcc
tcagaacaggttcaggcgggtatgccagtccatcatagcctacaagatgtttgactatgt
ggtgctagcgttcatcttctccaactgcatcaccgtggctctggagagacccaagatcat
gcagggcagcctggaaagagtcttcctaaccatctccaactacgtcttcacagccatctt
tgtagcagagatgacgctcaaggtggtgtctatgggcctgtatataggggaacaggcata
tctgaaaagcagctggaacgtgttggacggcttcctggtctttgtgtcgttgattgacat
tgtggtgtcaatggcgggcggggctaagattctgggtgtgctgagagttctcagattgct
acgcacactgcgccccctcagggtgatcagtcgagccccgggtctgaagctggtagtgga
gactctaataacgtctctgaaacctataggaaacattgtccttatctgctgtgctttctt
catcatatttggtatcctgggggtgcagctgttcaaagggaagttcttctactgctttgg
ccccgacgtcaagaacatcaccaacaagtctgactgtctgcaggccaactacaaatgggt
tcatcacaagtacaactttgacaacctgggacaggctctgatgtccctgtttgtgctggc
ttcaaaggacggttgggtcaacatcatgtaccatggcctggatgctgtaggggtggacca
acagccagtgatcaacaacagtccatggatgctcctctacttcatctccttcctccctca
tcgtcagtttctcgttctgaacatgtttgtgggcgtggtagtggagaacttccacaagtg
ccgtcagaaccaggaagtggaagaggctaaaaggagagaggataaacgacggagacgcat
ggaaagaagaggaggggtaagggagagacaggaagaagaggcccagaagatcccctacta
tgccagctacagccccctccgcctgtggatccacactctgtgtaccacctactacctgga
cctcttcatcaccttcatcatctgtatcaacgtcatcaccatgtcactggaacactacag
ccagccacgatctctggatctagtgttgaagtactgtaactatttcttcacatccacctt
tgtactggagaccctcctgaagctcaccgcctttggcttccgacgcttctttaaagacag
gtag
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