Oncorhynchus kisutch (coho salmon): 116366029
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Entry
116366029 CDS
T09179
Name
(RefSeq) polyadenylate-binding protein 1A isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116366029
09123 Folding, sorting and degradation
03018 RNA degradation
116366029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
116366029
03041 Spliceosome [BR:
oki03041
]
116366029
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116366029
mRNA cycle factors
Stress granule specific factors
116366029
Spliceosome [BR:
oki03041
]
Complex C
Other components
Complex C specific factors
116366029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
YflT
Motif
Other DBs
NCBI-GeneID:
116366029
NCBI-ProteinID:
XP_031674194
Ensembl:
ENSOKIG00005038467
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDITEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLRELFGKYVPGPALSIRVMTDDSGKSRGFGFVSF
ERHEDAQRAVDEMNGKDFNGRQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYV
KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
ATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQTQN
RAAYYSTNQLAQLRPGPRWATQGVRPQHFQNMPNAMRPSAPRPQTFGAMRPSSSQVPRMM
AGQRMATQALGQRPAGAAAAAAPVRMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKESAQKPTNPAGVPS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaagcgcccccagttacccgatggcctccctctacgtgggcgacctgcaccag
gatatcaccgaggccatgctgtacgagaagttcagccccgccgggcctatcctctctatt
cgagtctgcagggacatgatcactcgtcgatccctcggatatgcctacgttaactttcaa
caaccagccgatgctgaacgtgccctggacaccatgaacttcgacgtcatcaaagggaga
cctctgcgtatcatgtggtctcagcgtgacccttccctgaggaagagtggggtgggcaac
atcttcatcaagaacctggacaagtccattgacaacaaggccctctatgacaccttctca
gcgttcggaaacatcctatcgtgcaaggtggtttgtgatgagaatggctcaaagggctat
ggctttgtgcattttgagacccaggaggcggctgaaagagccattgagaaaatgaacggc
atgctgctcaatgacagaaaagtgttcgtcggacgcttcaaatcccgcaaagagcgcgag
gctgagcttggagccagagccagagagttcaccaacgtgtacatcaagaacttcggagag
gacatggacgacgagaagctgagggagctgttcgggaaatatgttccaggaccggccctg
agcatcagggtgatgacggacgacagcgggaagtcccgggggttcggcttcgtcagcttt
gagaggcacgaggatgctcagagggctgtagacgagatgaacgggaaggattttaacggc
cgccaggtctacgtgggccgagcccagaagaagggagagcgccagacggagctgaaacgc
aagtttgagcagatgaaacaggaccgtatgacccgctaccagggggtcaacctgtacgtc
aagaatctggacgacggcctcgacgacgagcgtctgaggaaggagttctctcctttcggt
accatcaccagcgccaaggtgatgatggaaggtggtcgcagcaagggcttcggcttcgtg
tgcttctcttccccggaggaggccaccaaggccgtgacagagatgaacgggcgcatcgtg
gccaccaagcctctgtacgtggcgctggcccagaggaaagaggagcgccaggctcacctc
accaaccagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctcaac
ccctaccagcctgcccctccttctgggtacttcatggctgccatcccccagactcagaac
cgcgctgcctactactccaccaatcagctggctcagctgagaccaggcccacgctgggcc
acccagggtgtccgaccacaacacttccagaacatgcccaacgccatgcgtccgtccgcc
cccaggccgcagaccttcggtgccatgaggccctcgtcctcccaggtgccacgcatgatg
gccggccagagaatggccacccaggccctgggccagcgtcctgccggtgcggcggctgct
gcagccccggtgaggatgcctcagtacaagtatgcagcaggcgtgaggaacccccagcag
cacatggccagccagccccaggtgcccatgcagcagccggctgtccacgtccagggacag
gagcctctgacggcctccatgctggcggctgctcctcctcaggaacagaagcagatgttg
ggcgagcgtctgttccctctcatccaaaacatgcaccccagtctggctggaaagatcacc
ggcatgctgttggagatagacaactccgagttgctccacatgctggagtctcccgagtct
ctccgctccaaggtggacgaggctgttgctgtgctgcaggctcaccaggccaaggagtcc
gcccagaagcccaccaaccccgccggagtccccagctaa
DBGET
integrated database retrieval system
