Oncorhynchus kisutch (coho salmon): 116371875
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Entry
116371875 CDS
T09179
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
116371875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
116371875
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
116371875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
DUF4757
PDZ_6
LIM
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
116371875
NCBI-ProteinID:
XP_031676853
LinkDB
All DBs
Position
Unknown
AA seq
1325 aa
AA seq
DB search
MEWREQTSVTCEDAFTEAQRWMEEVTNKSFGSNNFRSALENGVLLCHLINQLKPGLIKRV
NTLSTPMAGLDNVNVFLRACGTLGLHEAQLFHPGDLQDLSTRATLRCAESKRRLKNVLIT
IYWLGRKAQADPFYSGPQLNLRAFEGLLGIALSKALEETPRGSVTDRDYSDVIYPERDDE
LLPLTRSQTPGYSREDSVESFTSALSFDSAESRTLSCISDSILRAGSEDSSSDVEAENSF
RMKAAEGRESGLRNWGNVPAPFQRKKHEENRIKGCLPSPLTRNLEVNPGWIWSKSLNDIR
RFPSPTQVVRQVSEGGMELSPGAVSQDQLQMVRARVHESEAKWHNDLTKWKLRRHRSNCD
LRRKMQERDNIVLMANAGLITVGTFKSLQEDREEDEESLCSNGHKVSPSTSVSEGSLELR
PHTRAPTSVSEGSLVLRPHTRAPLALSSSVELPYSPGVSEPFTAPSVTLQGPGAVPQSEP
IVLGGTPVEPEGAGGLATFPNSTSLISSQIQAQTISSPALFISTGRDHNVSLLSNGIPTT
LPGSSSSLTTGTSSSLTTSDPVNGTGSHSPSASMDIPDHALLSTVESLTSVGAPGYVSAP
QQQELPLYRYSSRAPGGRGGASASLPRGYRRSEGSSSCLSAGFTPRPFGAKSSRGSSLPR
FYNLEKTASTRPQKMVTISEVAVRAQPWATANRSSVNQEVEEGGSQTQPSILKTRGVPGP
ATHPKPLPPSLLPSIPVSVRQNGSAQVRHSDRVSLTLKINSRPHFGFNTHWDSTGARVGG
IQPGSPAELCQLRAGDEIVSVGGHRVAEMSHNQWKGMMTSALQKGSLTMDVQRYGNNGPT
DTSGDATMVKLAQINGQEGVTSKSRKGGFQDDPLTGRSKGGSASAISDLQVPSLSTSPSS
WSWDPEEERRRQEKWQEEQERLLQEKYRQDQERLDAEWQQAQDEAGVEGYRQAEVTPDPL
PSRCIVGYVVPCVKSSTPNMESSGEMTNGITGLASPQPALSQPMPPVAHVASNQKEVVFD
GRREEPHPQEGRDLEEETVAEGDNWSGDSYGFTQLSIADRMKSKSSPSLEGFHRQEVKGQ
TLLLTVPLVNEWGPQGDRGATREVARRKPPQSMSLVEAERQQILDEMRKRTALLTDNSWI
RQRSTSDNKQPTNRRGPMRRYDSLDNLLSSTTLLSNPQRPHSSLGFAAPYRPPSSRHSMS
VALGGYSNGTQKHSPTWPRPFSTSSPPPNTGEEPATGESRPVSQQHHRVLTSRQVCSVCV
CPMGRGAAMVIETLNLCFHLACFQCVDCRCRLGGSEVRAQIRISNGKPYCDPCYIRLKSH
LATSL
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgagaacagaccagtgtgacctgtgaagacgccttcactgaggctcaacgg
tggatggaggaagtgacaaataaatcattcggaagcaacaacttccgctctgctctggag
aatggagtcctgctctgccatctaatcaaccagttgaaaccaggccttattaagagagtg
aacacgctgtctactccaatggccggactggacaatgtgaatgtgtttctgagagcgtgt
ggtacactcggtctacacgaggctcagctgtttcatcctggagacctgcaagacctgtcc
acacgcgctacactcaggtgtgcagagagcaaaaggaggctgaaaaacgttctaatcacc
atctactggctgggtcggaaggcccaggcggatcccttctactctggccctcagctcaac
ctcagagcgttcgagggactactgggcatcgctctgtccaaggctctagaagaaaccccc
agaggcagtgtaacagacagggactacagtgatgtgatctacccagagagggatgatgag
ctgctgcctctaacccggtcccagacacccggctacagcagagaggactccgtagagagc
tttacctcggccctgagctttgactcggcagagtcccgtaccctcagctgcatctctgac
tccatcctgagggccggcagcgaggactccagcagtgacgtggaggcggagaactctttt
aggatgaaggcggccgaaggcagagaatcgggactgaggaactggggcaacgtacctgca
cccttccagaggaagaaacatgaggaaaaccgaattaagggctgcctcccgagccccctc
accagaaacttggaggtaaacccaggatggatatggagcaaatcgttgaatgacatcagg
cggttcccgtcgcctacgcaagtagtgcgccaggtttctgagggtggcatggagctgagc
cccggcgccgtgagccaagaccaactgcagatggtcagagcccgggtccacgagagtgag
gccaagtggcacaacgacctgaccaagtggaagctccggcggcacaggtctaattgtgac
ctgcggaggaagatgcaggagagggacaacatcgtcctgatggccaacgcagggctcatt
acagtcgggacattcaagagtctgcaagaggacagggaagaggatgaggagtccctatgc
agcaatggccacaaggtctctccgtccacctcggtaagtgagggttccctggagctccga
ccccacaccagagcccccacctcggtaagtgagggttccctggtgctccgaccccacacc
agagctccgctggccctcagctcctctgtggagttaccctacagccccggagtgtcggaa
cccttcaccgcccccagcgtgaccctccagggacccggagccgtgccccaatcagagccc
atcgtcctaggggggacacctgtggagccagagggagctggaggattagccactttcccc
aactctacctctctcatctcctcccagatccaggcccagaccatctctagcccagctctc
ttcatctccactggacgagaccacaacgtctccttgctctcaaacgggatcccgacgacc
ctccctggatctagctccagtcttactactggtaccagttcttctctaactacctctgac
ccggtgaatggtaccggctcccacagcccctctgcctccatggacatcccagaccacgcc
ctcctctctactgtagagtccctgacctcggtgggagccccgggctatgtctcagctccc
cagcagcaggagcttcccctctacaggtacagctccagggctccgggaggaagaggaggg
gcatctgcctctctccccaggggataccgccggtctgagggctcttcgtcctgcctctct
gccggcttcaccccccggccgtttggagccaagtcctccagagggtcctcgctacccagg
ttctacaatttggagaagactgcttccacacgcccccagaaaatggtcactatctcagag
gtcgctgtcagggctcagccctgggccacagccaatcggagcagtgtgaaccaggaagta
gaggagggtgggagtcagacccagccctccatcctgaagaccagaggggttcctggacct
gccacccaccccaaacccttacccccttctctcctgcccagcatccctgtctcagtcaga
cagaatggctctgcacaggtacgtcacagtgaccgagtgagtcttaccttgaagattaac
agtcgaccacactttggtttcaacactcactgggactcgacaggagcaagagtcggaggc
atccaaccaggtagtcctgcagagttgtgccagctccgtgcaggtgatgagatagtgtct
gttggtgggcacagggtggcagagatgagccacaaccagtggaagggcatgatgacctct
gccctgcagaaaggcagtctcaccatggatgtacagcgctatggtaacaacggtccaact
gataccagcggagatgcaacgatggtgaaactggcccagatcaacggacaagagggggtg
acctctaagagcaggaagggaggttttcaggacgatcctctgactggccgaagtaaagga
ggatcggcgtcggcgatatctgatctccaggtgccgtccctcagcacctccccctccagt
tggtcctgggaccctgaggaagagaggaggaggcaggagaagtggcaggaggagcaggag
cgcctgctacaggagaagtaccgtcaggaccaagagagactggatgctgagtggcaacag
gcccaggacgaggcaggggtggagggatacaggcaggctgaggtgacccctgatcctcta
ccgtccagatgcatcgtgggatatgtagtcccttgtgtcaaatcatccacaccgaacatg
gaaagctcaggagagatgaccaatgggatcactggccttgccagtcctcagccagccttg
agccagcccatgccccctgttgcccatgtggcatccaatcaaaaggaagttgtttttgac
gggagaagggaggagcctcatcctcaagaagggagggacctggaagaggagactgtggca
gaaggagataattggtctggggactcctatggtttcacccaactatctatagctgacagg
atgaaatccaagtcctccccatcgttggagggtttccacagacaggaggtgaaaggtcag
actctgctgttgactgtccctctggttaatgagtggggtccccagggagacaggggcgct
accagggaggtcgctaggaggaagcctcctcagagcatgtcgttagtagaggctgagagg
caacagatcctggacgagatgaggaagaggaccgctctgctgaccgacaacagctggata
cgacaacgctccacctctgacaacaaacaaccaactaaccggcgagggccaatgaggagg
tacgactctctggacaaccttctctcttccaccacactgctctctaacccccaacgcccc
cactcctccctgggtttcgccgccccgtaccgccccccctcctcccggcacagcatgagt
gtggccctggggggttactccaacgggactcagaagcacagccctacctggccccgcccc
ttcagcacatcttcccccccgcccaacaccggagaggaacccgccaccggcgaatcacga
cccgtctcacagcagcaccaccgagtgctgacttctcgtcaggtgtgttcagtgtgtgtg
tgtcctatgggcagaggggctgccatggtcattgagaccctgaacctctgcttccacctg
gcctgttttcagtgtgtggactgcaggtgccgacttggagggtcagaggtcagagcccag
atcagaatcagcaacgggaagccttactgtgacccctgctacatccgactcaagtcacac
cttgccacttccctgtga
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