Oceanobacillus kimchii: ACN6MR_09740
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Entry
ACN6MR_09740 CDS
T11353
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
okm Oceanobacillus kimchii
Pathway
okm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
okm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACN6MR_09740 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
okm03021
]
ACN6MR_09740 (rpoD)
Transcription machinery [BR:
okm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACN6MR_09740 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
AhpC-TSA
DUF1118
Motif
Other DBs
NCBI-ProteinID:
XQA43275
LinkDB
All DBs
Position
complement(1895290..1896423)
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AA seq
377 aa
AA seq
DB search
MAEQKPSHMKEEVTETTEVTTLEQAKNRLLEIGKKRGSLAYEEVADGLSNFELEPEQMDE
FYEYLEEQGVDVIGESEDDPEMQKIAKEEEFNLNDLSVPLGIKINDPVRMYLKEIGRVNL
LSAAEEIDLASRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA
VEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLG
REPTPEEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHA
AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL
RKLRHPSRSKRLKDFLD
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacaaaagccttcgcatatgaaagaagaagtaacagaaacaacggaagtaact
actttagaacaagctaagaatagacttttagaaattggaaaaaaacgcggttcattagcc
tatgaagaggtggcagacggtttatctaatttcgaacttgaacccgaacaaatggatgaa
ttttatgagtacctagaagaacagggtgttgatgtgataggtgagtcggaggatgacccc
gaaatgcagaaaatcgctaaagaagaggaatttaatcttaatgatttaagtgtaccatta
ggcattaaaattaatgaccctgttcgaatgtacttgaaggaaattggtagggtaaatcta
ttgtctgctgcggaagagatcgatcttgcttcacgtattgaagaaggcgatgaagaagca
aaaagacgtcttgctgaagcgaacttacgattagtagttagtatagctaaacgttatgtt
ggaagaggaatgttgttcttggaccttatccaagaaggaaatatgggtcttatcaaagct
gtagaaaagtttgattatcgtaaaggatttaaatttagtacgtacgcaacatggtggata
cgtcaagcaattactcgtgcaatagctgaccaagcaagaacaattagaataccagttcat
atggttgaaacgattaataagttgattcgggtacaaaggtctttacttcaagaccttgga
cgggaacctactccagaggaaattggagaagaaatggagctaggtccggataaagtaaga
gatattcttaaaattgctcaagaaccagtatcattagaaacaccaattggagaagaagac
gattctcatttaggagactttatagaggatcaagaagcgatatcaccatcagatcatgcg
gcttatgaattactaaaagaacaattagaagatgttttagatacgctgacagatcgagaa
gaaaatgtcctgcgattacgatttggactagatgatgggcgaacaagaacattagaagaa
gtaggaaaagtcttcggagtaactcgtgaacgaattcgacaaatagaggctaaagcactc
cgtaagttaagacacccaagtcgaagcaagcgtcttaaagactttttagattaa
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