Owariibacterium komagatae: Ruko_02420
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Entry
Ruko_02420 CDS
T10753
Symbol
pcrA_2
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oko Owariibacterium komagatae
Pathway
oko03420
Nucleotide excision repair
oko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ruko_02420 (pcrA_2)
03430 Mismatch repair
Ruko_02420 (pcrA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oko03400
]
Ruko_02420 (pcrA_2)
Enzymes [BR:
oko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ruko_02420 (pcrA_2)
DNA repair and recombination proteins [BR:
oko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ruko_02420 (pcrA_2)
MMR (mismatch excision repair)
Other MMR factors
Ruko_02420 (pcrA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BFJ83825
LinkDB
All DBs
Position
234108..236396
Genome browser
AA seq
762 aa
AA seq
DB search
MSEIMMIFEKFLQHYRLNHLDPQQRTAASTTDGPVLLLAVPGSGKTTTLIARLGYLVLGC
GVRPEDILTMTYTVAATQEMRQRFIDRFGKDVGNRMEFRTINSVCYKIIALYGQMGNWIP
RMATEGESDAVVRDIYKTLAQSYPTDADIKTMRMVISNIKNRMMDKVQTEAAGFDLPFSA
WTLYNDYQAAMNERQLMDFDDQLVMAYQILISEPQILNAYQEKYKHICVDEAQDTSKIQH
EIIALLAQKNRNLFMVGDEDQSIYGFRAACPQELMEFEKKWPGAKILLIETNYRSTDEIV
DASAKFIRQNKARRDKKMHGVNGHGEAIRAIPVANRLEQYRLLAGMGQTAMETNSPLTVL
YRNNDSALPVIDALEKRGIPYQAKGNDGLFFKGRVYLGVMDFVRLALNPRDKDAFMSLYY
KLGLFVRRQQAQAAVSRYSKKPLLDVLGEVTGNDKCHDLSRIFASLLTMKAVDALKTIRY
QLKFADYLKSCKVGTARLDTLEFLAQEDASLTDFVTHMERLQKIIRDGRKEPASFVLSTI
HSAKGLEYDHVILADVYDGEFPVDPYQTETPLVGETDLEEERRLFYVGMTRARKTLGIIR
VAGQTSDFADFVFGTGNQGKKNSQPKASASSSKTVAREKTQKWQKEKSRRPRDNDWSKWD
DALWDEGHNNAPQWPVRPSAAQSSAKRISSFSGSSVHQVTSNFDETVEFRVGDKVKHAVF
GEGTVVELMKNGILRIRFAKEEKKIAPGYAVNAGLMKKISGS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaattatgatgatatttgaaaaattcctccagcattaccggctgaaccatctg
gacccgcagcagcgaacagcagcgagtaccactgatggtccggttcttctgctcgccgtt
ccgggaagcggcaaaaccacgaccctgattgctcggcttggctatctggtacttggatgc
ggagtaagacccgaggacattctgaccatgacttatacggttgccgctacacaggaaatg
cgtcagcggtttattgaccgatttggaaaagatgtcggcaaccggatggaatttcggact
atcaacagcgtgtgctacaaaatcattgctttgtacggccagatgggcaactggattcct
cgtatggcaacagagggggagtctgatgcagttgtgcgtgatatctacaagaccctcgcg
caatcgtatccaacggatgcggatatcaagacgatgcgcatggtgatttcaaacattaag
aaccggatgatggataaagtacagaccgaggcggccggttttgaccttccgttttctgca
tggacactttacaacgattatcaggctgcaatgaacgaaagacagctgatggattttgac
gaccagcttgtaatggcgtatcaaatccttatcagtgagccgcaaattctcaatgcgtat
caagagaagtataagcatatctgcgtggatgaggcgcaggatacgagcaaaatccagcac
gaaatcatcgccctcttggcacagaaaaatcgaaaccttttcatggtcggcgatgaagac
cagtcgatttacggattccgtgctgcttgcccgcaggaattgatggagtttgagaaaaaa
tggccgggagcgaaaatcctgctcatcgaaacgaactatcgttccacagatgaaatcgta
gatgcgtctgcaaaattcattcggcaaaacaaagcgcgtcgagacaagaaaatgcacggt
gtaaacgggcatggagaagctatccgggcaattccggtcgccaatcgactggaacagtac
cgattgctcgctggcatggggcagaccgcaatggagaccaattcgccgctcacagttctg
taccggaataacgattcggctttgccggtcatcgacgccctcgaaaagcgagggattcct
tatcaggcaaaaggaaatgatggtctgtttttcaaaggccgtgtttatcttggcgttatg
gatttcgtccgactggccttaaatcctcgcgataaggatgcgttcatgtccttgtattat
aagctgggattgttcgtccggcgccagcaggcgcaagcggccgtctcgcgatacagtaag
aagccactgctggatgttcttggggaagtaaccggcaatgacaagtgccatgacctgagc
cgaatctttgcttcgctgctgaccatgaaagcggtggacgccttaaagaccatccggtat
cagttgaaattcgcggactacctgaaatcctgtaaagtcggaacggcccgtttggatacg
ttggagtttctggcacaggaagatgcttcgttgacagattttgttactcacatggagcgg
ctgcagaaaatcattcgagacggccgtaaggagcctgcgtcgttcgttctgtccacgatt
cattctgcaaaaggccttgaatatgaccatgttatccttgcagatgtctacgatggggag
ttcccggtagacccgtatcaaaccgaaacgcctctcgttggcgaaacagacctggaggaa
gagaggcgtctgttttatgttggtatgactcgtgcccgaaaaacgcttggtattattcga
gttgccggacagacttcggattttgcggattttgtgttcggaactggaaatcagggcaag
aagaactcccagccgaaagcaagtgcttcgtcctcgaagacggtcgccagggagaaaacg
cagaaatggcaaaaagagaagagccgccgtccccgggacaatgattggtccaaatgggat
gatgctctctgggatgaagggcacaataacgccccacagtggccggtacgcccttccgct
gcacaatcgtctgcaaaaagaatcagtagtttctccggctcaagtgtacatcaagttact
tccaactttgacgaaacggtcgagttccgtgtcggagacaaagtgaagcacgccgttttc
ggtgaaggcacggttgtggagctgatgaagaacggaatccttcggattcggtttgccaag
gaagagaagaaaattgcgccggggtacgctgtgaacgcggggcttatgaaaaaaattagc
gggtcataa
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