Owariibacterium komagatae: Ruko_05500
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Entry
Ruko_05500 CDS
T10753
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
oko Owariibacterium komagatae
Pathway
oko03030
DNA replication
oko03430
Mismatch repair
oko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ruko_05500 (holA)
03430 Mismatch repair
Ruko_05500 (holA)
03440 Homologous recombination
Ruko_05500 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oko03032
]
Ruko_05500 (holA)
03400 DNA repair and recombination proteins [BR:
oko03400
]
Ruko_05500 (holA)
Enzymes [BR:
oko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ruko_05500 (holA)
DNA replication proteins [BR:
oko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ruko_05500 (holA)
DNA repair and recombination proteins [BR:
oko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ruko_05500 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
HP_1247_M
DNA_pol3_delta
bpX0
DUF6788
Motif
Other DBs
NCBI-ProteinID:
BFJ84133
LinkDB
All DBs
Position
complement(561204..562238)
Genome browser
AA seq
344 aa
AA seq
DB search
MALNEQEFQKILNSLERYAVFYYYSTEEYLARSYASRTLTALARETDAEVTRIDGPAPSI
GEAVAAAGTISLFGTKRVVELAQVEPSAMNDADVDALCDLFATMENAVIVLYTVFKDDKA
KQTKKAKKLLDAAGRFGIAAEILKPGVQDAKRFIQQKAQEMETELEPGADTDLLERCGAD
LFLLENEVSKLAAASGYTRITRELVSTMGTQNIEADVFEMVRYVTAKNKPRAFQKLNQLL
ELQNEPIAIAAALAGSFIDMYRVKCGAASRKNYAAVHKDFHYRGSDYRLRKSGETASRYT
LHQLASILELLERLDASLKSSAADKNVLLQTALCEIMQVGDGRS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggctttgaatgaacaggaatttcaaaaaatactgaactcgctggagcggtatgccgta
ttttattactattccactgaagaatatctggcacgcagctatgcgtcccgcacattgacg
gcattggcccgtgaaacagatgcggaagtgacgcgcattgatggccccgcaccttccatc
ggagaagcggtggctgcggcgggaacaatttctttgttcggcactaagcgcgtggtggag
ctggcacaggtggagccttctgcgatgaacgatgcggatgtagatgccttgtgtgatttg
tttgccacaatggaaaatgcagtgatcgttctgtataccgtgtttaaggacgataaggca
aaacagactaaaaaggcaaaaaaattgctggatgcagccggccgctttgggatcgcagcc
gaaattttgaagcccggcgttcaggatgccaagcggtttattcagcaaaaagcgcaggag
atggaaacagagctggagccgggagcggacaccgatttgctggaacggtgcggtgcggat
ttgttcttgctggagaatgaggtcagcaagcttgcggccgccagcggctatactcggatc
acgcgggaactggtcagcaccatgggaacgcagaatattgaagcagatgtgtttgagatg
gttcggtatgtgacagcaaaaaacaagccccgggcctttcagaagttgaaccagctgctg
gaactgcaaaatgagccgattgcgattgctgcggccctggcaggctccttcattgatatg
tatcgcgtgaaatgcggtgcagccagcagaaaaaattatgctgcggtacacaaggacttt
cattaccgcggcagcgactaccggctgcggaaatcgggagagacggcttccaggtacacg
ctccatcagctggcgtccatcttggagctgctggaacggctggatgcttcgctgaagtct
tctgcggcggataaaaatgtgctgctgcagacagccctgtgcgagattatgcaggtggga
gatggacgttcatga
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