Owariibacterium komagatae: Ruko_20690
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Entry
Ruko_20690 CDS
T10753
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oko Owariibacterium komagatae
Pathway
oko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ruko_20690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oko03019
]
Ruko_20690
Enzymes [BR:
oko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ruko_20690
Messenger RNA biogenesis [BR:
oko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ruko_20690
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFJ85652
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All DBs
Position
2119798..2121381
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AA seq
527 aa
AA seq
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MRFSELNLISPILAAADAAGYTEPSPIQQQAIPPVLAGRDLLGCAQTGTGKTAAFAMPIL
QLVYSRCRRDSARPVRALVLTPTRELALQIDESFAAYGARLPVRHTVIFGGVGQAPQVEK
LRAGVDVLTATPGRLNDLIAQGHVDLSSVEIFVLDEADRMLDMGFVQDVRKVLRHLPKKR
QTLLFSATMPREIEQLAASILHEPVRVMVTPPATTVEAIRQSVCFVDKGNKKHLLASLLQ
DKAVTSALVFTRTKHGADRVVRDLAKAGIQAAAIHGNKSQTARQTALTRFKTGQIRVLVA
TDIAARGIDVSGLSHVFNYDLPNVPETYVHRIGRTGRAGADGVAISFCCADEVEYLRDIE
KLTRQNIPVCGHAWPMQEGPVPVQAENRPQKRKEEKKVMEQETQKQTVPAEGEGAPKKRR
RRGGRRHNKNRQGAAAAQPAVQNAEAKAEKTEKKEKAPAQQPRAPKAAAERAAARQRPAK
EAPRRQPRKEAEEVDDSIQLISRRAPAQKFASFEEYMKAHGMGGDEE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcgattcagtgaactgaacctgatctctcccattctcgcagcggcggacgcggccgga
tatacagagccgtcgcccattcagcagcaggccatcccgccggttttggccgggcgggat
cttttgggatgcgcccagacgggcaccggcaaaacagcggcgtttgccatgcccattttg
cagctggtgtacagccgctgccgcagagacagcgcccgcccggtgcgcgcgctggtgctg
acgcccacccgggagctggcgctgcagatcgacgaaagttttgctgcctacggcgcgcgg
ctgccggtgcggcacaccgtcattttcggcggtgtggggcaggcgccccaggtggaaaag
ctgcgggcgggcgtggatgtgctcaccgcaacccccggccgcctgaacgatttgattgcg
cagggacatgtggatttgtccagcgtggagattttcgtgctggacgaggcggaccgcatg
ctggacatggggtttgtgcaggatgtgcgcaaggtgctgcggcatctgcccaaaaagagg
cagacgcttctgttctcggccaccatgccccgggagatcgagcagctggcggccagcatc
ctgcacgagccggtgcgggtcatggtcacgccgccggccaccacggtggaggccattcgc
cagagcgtctgctttgtggacaagggcaataaaaagcatcttctggccagccttctgcag
gacaaagccgtcaccagcgcgctggtgttcacccgcacaaagcacggggcggaccgtgtg
gtgcgggacctggccaaagcgggcattcaggcggcggccattcacggcaataaaagccag
accgcgcgtcaaactgcgctgacccggttcaaaaccgggcagatccgggtgctggtagcc
acggacatcgcggccaggggcatcgatgtgtcggggctttcccacgtgttcaactacgat
ctgcccaacgtgccggagacctatgtgcaccgcatcggccgcacgggccgcgcgggtgcg
gacggtgtggcgatcagtttctgctgcgccgacgaagtggagtacctgagggacattgaa
aagctgaccaggcagaacattcccgtttgcggccatgcctggcccatgcaggagggcccc
gtgcccgtccaagcggaaaaccggccgcaaaaaaggaaagaggagaaaaaagtcatggaa
caggagacccagaaacagaccgtgcccgccgagggcgaaggcgctcccaaaaagcgccgc
cgccggggcggaagacggcacaataaaaaccggcagggcgcggcagcggcacagcccgcc
gtgcaaaacgcagaggcaaaggccgaaaagaccgagaaaaaggaaaaggccccggcccag
cagccccgggcacccaaagcggcggcagagcgcgcggcagcgcggcagcgccccgccaaa
gaggcgccccgccgccagccccgcaaggaggccgaagaggtggacgacagcattcagctg
atcagccgccgggcacccgcccagaagtttgccagctttgaagagtacatgaaagcgcac
ggcatgggcggcgacgaagaataa
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