Owariibacterium komagatae: Ruko_31030
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Entry
Ruko_31030 CDS
T10753
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
oko Owariibacterium komagatae
Pathway
oko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ruko_31030 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oko03019
]
Ruko_31030 (rny)
Messenger RNA biogenesis [BR:
oko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ruko_31030 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BFJ86686
LinkDB
All DBs
Position
complement(3132236..3133789)
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AA seq
517 aa
AA seq
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MPVWATIAIAVVLSAVVGTIAFFAGVSHRRKIAEAKIGSAEEEAKRLVNDAMKTAQQKRK
EALVEAKDAALQMKTEADKEIKERRNELTRQERRLDQKEEALDRKVANMEQKEEELQKRT
ELAEAKLAEIEQIRTRELERLETIAGLSSEDAKQLLLSNLDQELTHEKAMHIAAYEAQTK
DEAEVIARELISQAVARCAADHSSEATVSVVPLPSDEMKGRIIGREGRNIRALENATGVD
LIIDDTPEAITLSSFDPVRREIARMTLERLISDGRIHPARIEETVDKCRRELELTMKREG
EKAVMDAGLHGLHPDIVKLLGRLRFRTSYGQNVLNHSLEVSYLAGIMAAELGLNVTQAKR
AGLLHDIGKALDHEIEGSHISIGVEIAKKYKENPAIVHAIEAHHGDVEPKTALAFLVMAA
DAISAARPGARRENLESYIKRLETLEEISNSFEGVERSFAIQAGREVRIMVKPEAISDDQ
LVILAHSISRKIEEDLDYPGQIKVNVIRESRAVEYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgccagtatgggcgaccatcgccatcgctgtcgtgctgagtgccgttgtgggaacaatt
gcgtttttcgcaggcgtttcccatcgccgcaagattgcagaagcaaaaatcggcagcgcc
gaggaagaagccaagcgtcttgtaaacgacgcaatgaaaacagcgcagcagaagcgaaaa
gaagcacttgtggaagcgaaggacgctgcgcttcaaatgaagaccgaagccgacaaagaa
atcaaggaacgccgcaatgaactgacccgtcaggagcgtcgtctggaccaaaaagaagag
gccctggaccgcaaagtggccaacatggagcagaaagaagaagagcttcagaaacggacg
gaacttgccgaggcaaaattggctgagatcgagcagatccgtacccgtgagctggaacgc
ctggagacgattgccggtctttccagtgaagatgccaaacagctactgctctccaacctg
gatcaggaactgacccatgagaaagccatgcacattgcagcttatgaagcgcagaccaaa
gacgaggcggaagtcatcgcccgcgaactcatcagccaggcggtggcccgctgcgcggcc
gatcattccagcgaagcgacggtatcggttgtgccgctgcccagcgatgaaatgaagggc
cgcatcatcggccgtgagggccgcaacatccgcgcactggaaaatgccaccggcgtggat
ctgatcattgacgacacccccgaagcgatcacgctttccagctttgaccctgtgcgccgc
gagattgcccgcatgacgctggagcgtctgatcagcgacggccgcattcatcccgcgcgc
atcgaggaaacggtggacaaatgccgccgcgaactggaactgaccatgaagcgcgaaggc
gaaaaagccgtgatggatgccggactgcatggcctgcatcccgatatcgtaaagctgctg
ggccgcctgcgtttccgcaccagctatggtcagaacgtgctgaaccactctctggaagtt
tcttacctggccggtattatggctgcggaactcggtttgaatgtgacccaggccaaacgc
gccggtctgctgcatgacatcggcaaggcgcttgatcacgagatcgaaggcagccatatc
agcatcggtgtggaaattgccaagaaatacaaagagaatcctgccattgtacacgcgatc
gaagcgcatcacggtgacgtggagcccaagaccgctctggccttcctggtgatggcagcc
gacgcgatcagcgcagcccgtcccggtgcacggcgtgagaatctggagagctacatcaaa
cgtctggaaacgctggaagaaatttcgaacagcttcgaaggcgtggaacgcagctttgcc
atccaggccggccgcgaagtgcgcatcatggtcaagccggaagctatttccgacgatcag
ctggtcattctggcgcacagcatttcccgcaagatcgaggaagatctggactatcccgga
cagatcaaagtcaatgtcattcgcgaatcgcgcgcagtggaatacgcaaaataa
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