Owariibacterium komagatae: Ruko_33500
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Entry
Ruko_33500 CDS
T10753
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
oko Owariibacterium komagatae
Pathway
oko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Ruko_33500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oko03400
]
Ruko_33500
Enzymes [BR:
oko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Ruko_33500
DNA repair and recombination proteins [BR:
oko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ruko_33500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
PIF1
NAT10_TcmA_helicase
AAA_22
DEAD
MeaB
HHH_5
TrwB_AAD_bind
SLFN-g3_helicase
AAA_28
AAA_5
UvrD-helicase
nSTAND3
AAA_16
AAA
AAA_24
FtsK_SpoIIIE
IstB_IS21
RsgA_GTPase
CbiA
AAA_29
T2SSE
UvrD_C
SRP54
DUF815
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
BFJ86933
LinkDB
All DBs
Position
3403750..3405954
Genome browser
AA seq
734 aa
AA seq
DB search
MEQELETLTGTVENIVYRSEETGYTVLEFASDGILFTAVGEMEDVAEGEEVVLHGRFVTH
PSFGEQLRVEAYEVSLPETAAAIRRYLASGVLPYIGKAMAGRIVDLFGEDTLEVIASQPM
SLTAVKGISEEKARAISNEFKRLYGVREAINCLAKYNLSTATVVAMYRHYGPDTVDVIAR
DPYVLCAYPAYQDFSVADAIAQNMSFEYNSQERVRAGLQYVLRHNLQNGHACLPDDKLCA
AVSSFLRVEPETVTSVLENMMEYGDLSCVETEKMRAVYLPDYLRAERNIAAHLRMLMSLS
APGEEQGDKLIDRIEQLQGIRYAPLQREAISAALRSNALVLTGGPGTGKTTAVNAMLAAF
EQCGDRVALAAPTGRAAKRLSELTGRKAKTIHRLLEVDRSGGEIVRFIHNEKNLLKCDVV
VIDEMSMVDDMLFESLLLALKPACKIIMVGDEDQLPSVGAGNVLGNIIASGIVPTVRLTE
IFRQAAESMIVSNAHRIVTGQPPQKGGLDSDFFMLESDGEACADLVCDLVCRRLPQSYGF
DPFEDIQVLCPSKIGPLGTVALNAALQQRLNPPGPGRPQIQVRDKILRVGDKVMQIKNNY
DIPYTRPDGGEDGAGAFNGDMGVIESVDVRGGSVTVRSEERRIVYTSEYLRELEPAYAVT
IHKSQGSEFPAVIVPVMDVPPKLCYRNLLYTGVTRAKSLCILAGHSREVVQMVHSVRRNK
RFSCLAELLQRDDL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
ttggagcaggagctggaaacgctgaccggcacagtggaaaatattgtttaccgaagtgag
gaaacaggatacactgtgctggaatttgccagcgacggaattttgtttacggcagtgggc
gaaatggaagatgtagccgaaggggaagaagtggtccttcatgggcgctttgtaacgcat
cccagttttggcgagcagctgcgggtggaggcctatgaggtcagccttccggagacggcg
gcggccattcggcgctacctggccagtggcgtgctgccctacatcggcaaggcaatggca
ggccgcattgtggatctgtttggcgaggatacactggaagtgatcgccagccagcccatg
agcctgactgcggtgaagggaatcagcgaagagaaggcaagagcgatttccaatgaattt
aaacgcctgtatggcgtgcgggaggccatcaactgcctggccaagtacaacctttccact
gccacggtcgtggcgatgtaccgccactacgggccggacaccgtggatgtgatcgcgcgg
gacccgtatgtgctgtgcgcctatcccgcttatcaggatttctccgtggcagatgccatt
gcgcagaatatgagttttgaatacaattcgcaggagcgggtccgcgccgggttgcagtac
gtccttcggcacaatttgcagaacggtcatgcatgccttccggatgacaagctgtgtgcg
gcggtttcttcctttttgcgtgtggagccggagacggtcacctctgtgctggaaaatatg
atggaatacggcgatctcagctgtgttgagaccgaaaaaatgcgtgcggtgtaccttccg
gattatctgcgggccgaacggaacatcgcggcgcatctccgtatgctgatgagcttgtcc
gcacccggtgaagagcagggagacaagctgatcgaccgtattgaacagcttcaggggatt
cgctatgcgcctcttcagagggaggcgatttcggcggcgctgcgcagcaatgcgctggtg
ctcaccggcggtcccggtacaggtaaaaccactgcggtcaatgccatgctggccgctttt
gaacaatgcggagaccgggtcgcgctggctgctccaacgggccgtgcggcgaaacgactt
tcggaactgaccggccgcaaggcaaaaaccattcaccgtttgctggaggtggatcggtca
ggcggggaaatcgtccggtttattcacaatgagaagaacttgctcaagtgcgacgtggtt
gtgatcgatgagatgagcatggtggatgacatgctgtttgaaagtctccttttggcactc
aaaccggcgtgcaagatcattatggtgggagacgaagaccagctccccagtgtgggggcc
ggcaatgtgttgggaaacatcattgcctccggcattgtgccgaccgtgcgccttacggaa
atttttcgtcaggctgcggagagcatgatcgtttccaatgcgcatcgcattgtgacaggg
caaccgcctcaaaagggcggcttggacagcgactttttcatgctggaatccgacggcgag
gcctgcgcggatctggtctgtgatctggtttgccgccggttgcctcagagctatgggttc
gatccctttgaggatattcaggtgctttgcccaagcaaaatcggaccgcttgggactgtt
gcactgaatgccgcgcttcagcagcgcctgaacccgccgggacccggacggccgcagatt
caggtgcgggataagatcctgcgcgtgggcgacaaagtcatgcagattaagaacaattat
gacattccctatacgagacctgacggcggtgaggacggagcaggggcgttcaacggggat
atgggcgtcattgagtcggtggatgtgcgcggcggcagtgtcacggtgcgcagcgaggaa
cggcgcatcgtctacacttcggagtatctgcgggaactggagccggcctatgctgtcacc
atccacaaaagccagggcagcgaattccccgcggtcatcgttccggtgatggatgtcccg
cccaagctgtgctatcgcaatcttttatacaccggtgtcacgcgggcaaaaagcctttgc
attctggcagggcacagtcgtgaggtggtgcagatggtgcacagcgtacggcgcaataag
cgcttctcctgccttgcggaactgctgcagagggatgatttatga
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