KEGG   Oryzias latipes (Japanese medaka): 100049229
Entry
100049229         CDS       T02443                                 
Symbol
rbm8a
Name
(RefSeq) RNA-binding protein 8A
  KO
K12876  RNA-binding protein 8A
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03013  Nucleocytoplasmic transport
ola03015  mRNA surveillance pathway
ola03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100049229 (rbm8a)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100049229 (rbm8a)
   03015 mRNA surveillance pathway
    100049229 (rbm8a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    100049229 (rbm8a)
   03041 Spliceosome [BR:ola03041]
    100049229 (rbm8a)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100049229 (rbm8a)
Spliceosome [BR:ola03041]
 Complex C
  Other components
   EJC/TREX
    100049229 (rbm8a)
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5 RRM_7
Other DBs
NCBI-GeneID: 100049229
NCBI-ProteinID: NP_001098149
UniProt: Q8JJC6
LinkDB
Position
16:29128010..29133093
AA seq 173 aa
MADVLDLHEAGGEDFPMDEDESIHKLKEKAKKRKGRGFGADDGARSRAKEDYDTVEQDGD
EPGPQRSVEGWILFVTGVHEEATEEDIHDKFSEFGEIKNLHLNLDRRTGYLKGYALVEYE
TYKEAQAAMEGLNAQDLMGQPVSVDWAFVRGPPKNKRRTGGRRRSRSPDRRRR
NT seq 522 nt   +upstreamnt  +downstreamnt
atggcggacgtgttggaccttcatgaggcgggaggagaagactttcctatggatgaggat
gaaagcatccacaagttaaaggagaaagccaagaagaggaaaggacgaggttttggtgca
gatgatggggcccggtccagagccaaagaggactatgatactgtggaacaggacggagat
gagcctgggcctcagagatctgtagaaggctggatcctgtttgtgacgggcgtgcacgag
gaggccacagaggaagacatccacgataagttctcagagtttggggaaatcaagaacctc
catcttaatctggatcgcagaactggctatctgaagggctacgcactggtggagtatgag
acgtacaaagaggcccaggcggccatggaggggctcaacgctcaggatctgatgggccag
cctgtcagtgtagactgggcatttgtcagggggcccccaaagaacaagagaaggaccggt
gggcggagacgcagcagaagtcccgacaggaggcggcgttaa

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