Oryzias latipes (Japanese medaka): 100049244
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Entry
100049244 CDS
T02443
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04110
Cell cycle
ola04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
100049244 (smc1a)
04114 Oocyte meiosis
100049244 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ola03036
]
100049244 (smc1a)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
100049244 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
100049244 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
SlyX
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
100049244
NCBI-ProteinID:
XP_004070486
UniProt:
A0A3P9IPX3
H2LT13
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All DBs
Position
7:11924773..11934708
Genome browser
AA seq
1231 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYQEDNGEERTFTRVIIGSSSEYRINSKVVGLPDYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNETEIEKLNK
ELGQRNKEIDKDRKKMDHVEEELKDKKKELGRMMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTAHKIKKLEAARKSLQNAQKMYKKRKADMDELDKEMRAVEIAKQDFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYIATSRQSLDEQKRMEEELTEEVEMAKRRIDEINMELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSREREITDLRDRMNLVEDEVFIEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQVDYEKNQLKEDQEKVMMWEQ
TVKKDEAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHEMEEIRKKLGG
ANKELTQLQKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLRSGTMDDISQGEGSSQTD
ESSSQRTSSSVLAKEALIEIDYSSLSEDLKDALSEEEIKAETNTLQQRLNEQQSILQRIS
APNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNTCFESVATNI
DEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALL
FAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSLI
GVYPEQGDCVISKVLTFDLSQYQDANPNPNE
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgggttatttaaaactcattgagatcgaaaattttaaatcatataaaggaaggcagatt
attggaccgtttcataaatttactgccataatcggacccaatggatcgggaaaatccaac
cttatggatgccatcagctttgtgttggcagaaaaaaccagtaatctgcgtgtgaagact
ctgaaggatctaatccatggagcgcctgtaggaaaaccagctgcaaacagagcctttgtc
agcatggtttaccaagaagataatggcgaggaacgcaccttcacgagagttatcataggt
tcttcttctgagtatcggatcaacagcaaagttgtgggtctgccagattatagcgaagag
ctggaaaaacttggcattttgatcaaggcccggaacttcctggttttccagggagcggta
gagtctattgccatgaagaaccccaaagagcgcacagccctgtttgaggaaatctcccgc
tcaggagagctggcccaggagtatgatcgaaggaagaaagaaatggtgaaggcagaagaa
gacacacagttcaattatcatcggaaaaaaaacatcgccgcagaacgcaaagaagccaag
caagagaaggaggaggctgagcgttaccagcgtcttaaggatgaagttgccagggccagt
gttcagctccagctcttcaagctctaccacaatgaaactgagattgaaaagctcaacaaa
gagttgggccagcggaacaaggagattgacaaggaccggaagaagatggaccatgtggag
gaagagttgaaagacaagaaaaaggagctgggcagaatgatgagggagcagcagaccatc
gagaaagaaatcaaagagaaggattctgagctgaaccagaagcggcctcagtacatcaag
gccaaggagaacactgctcacaagatcaagaagctcgaggcggcgcgaaaatcgctccag
aacgcacagaaaatgtacaagaagcgcaaagcagacatggatgaattagacaaagagatg
agggcggtggaaatagcaaaacaagattttgaggagaggatggaggaagaggcgcagagc
cagggccaggacctcactcttgaggaaaatcaggttaagcagtaccatcgcctgaaggag
gaggccagtaagcgagctgcaactttggctcaagagctggaaaagtttaatcgcgaccaa
aaagctgaccaggaccgccttgacttggaggagaggaagaaagtggaaacagaggccaaa
atcaaacagaaaatccgggaaattgaggaaaaccagaagcgtatcgagaaattagaagat
tatattgccaccagcaggcagtcacttgatgaacagaagcgcatggaggaagaactgacc
gaggaggtggagatggccaagagaagaattgatgagatcaacatggagcttaaccaggtt
atggagcagctgggagacgccagaatcgacaggcaggagaacagtcgacagcagcgcaaa
gccgagatcatggagagtatcaaacggctgtatcctggctctgtgtacggccgtctgatt
gacctgtgtcagcccactcagaagaagtatcagattgctgtcaccaaagtgttgggcaaa
aacatggatgccatcattgttgactctgagaagacgggcagagactgtattcagtacatc
aaggagcagagaggagagcctgagaccttccttcctctcgactacctcgaggtgaaaccg
acagatgaaaaactcagagaactgcgaggggcaaagctggtgattgatgtgattcgctac
gagccgccccacatcaagaaagctctccagtacgcctgtggcaatgctcttgtatgtgat
aatgtagaagatgcacgaagaatcgctttcggaggcccttacagacacaagaccgtcgct
ctggatggaactctgttccagaagtctggagtcatctctggaggagcgagcgacctgaaa
gccaaggccagacgctgggatgagaaggcagtcgataaactcaaagagaaaaaggaaaaa
cttacggaagagcttaaggagcaaatgaaagcaaaaaggaaggaggcagagctgcgacag
gtgcagtctcaagctcacgggctgcagatgaggctgaagtactctcagagtgatctggaa
cagacgaaaactcgacacctctccctcaacatgcaggaaaagtctaagctagagagcgag
cttgcaaacttcggccctcgcatcaatgacattaagaggataatccagtcccgtgagcgt
gaaatcacagacctccgcgatcggatgaacctggtggaagacgaggtgtttattgagttc
tgcaaagagattggagtgaggaacatcagagaatttgaggaggagaaagtaaagaggcag
aatgagattgccaagaaacgtcttgagtttgagacccagaaaactcggctgggcatccag
gtggactatgagaagaaccagctgaaggaagatcaagagaaggtcatgatgtgggagcag
actgttaagaaggatgaagcggaaatagagcgactaaagaaggaggagcacaggcacatg
aaaatcatcgatgagacaatggctcagctacaggatctgaaaaaccagcacctcaccaag
aaatctgaagtcaacgataaaaaccatgaaatggaagaaattcgcaaaaaacttggaggc
gctaacaaagagttgacccagctccaaaaggaggtgacagccatcgagaccaaactggag
cagaagcgcagcgaccgccacaacctgctgcaggcctgcaaaatgcaggacatcaggttg
ccccttcgctcaggaactatggatgacatcagccagggagagggaagctctcagaccgac
gagtctagcagtcagaggacatcgagcagcgttctggctaaagaagctcttattgagatc
gattacagcagcctgtctgaagaccttaaggatgctctgtcagaagaggagatcaaggcg
gagacaaacacactccagcagcgtctgaatgaacagcaaagcatcctgcagaggatcagt
gctcccaacatgaaggccatggaaaagcttgagagtgtcagggacaagttccaggagacc
agtgatgagtttgaagctgctcgtaagagggctaagaaagctaagcaggcctttgagcaa
atcaagaaggagaggttcgatcgctttaacacttgctttgagtccgtggccaccaacatt
gatgagatttacaaggcactgtctcgcaacagcagcgcccaggctttcctgggcccagaa
aacccagaagaaccgtatctggacggcatcaattataactgtgtggctccaggaaaaagg
ttcagacccatggataatttgtctggaggagagaagactgttgctgctctggctctgctg
tttgctattcacagctacaaaccggcccccttctttgtcctggatgagattgatgccgct
ctggacaacactaatattggcaaggtggcaaattacatcaaagaccagtctgtgcagaac
ttccaggccatcgtcatttctctgaaggaggagttctacactaaggcagattctctcatt
ggtgtctatccagagcaaggagactgcgtcatcagcaaggtgctcacctttgacctctcc
cagtatcaggatgccaatcccaatccaaatgaataa
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