Oryzias latipes (Japanese medaka): 100049276
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Entry
100049276 CDS
T02443
Symbol
smc3
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04110
Cell cycle
ola04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
100049276 (smc3)
04114 Oocyte meiosis
100049276 (smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ola03036
]
100049276 (smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ola00535
]
100049276 (smc3)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
100049276 (smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
100049276 (smc3)
Proteoglycans [BR:
ola00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100049276 (smc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
AAA_29
OmpH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
100049276
NCBI-ProteinID:
XP_004066378
UniProt:
A0A3P9JLP0
A0A3B3HL13
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All DBs
Position
1:36680916..36712960
Genome browser
AA seq
1216 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTVVDPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSSKRETCGDKSRQLRDAQQDARDKVEETERVVRELKSKISAMKEEREQLSAERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELQETEPKFNMVKEKEER
GISRLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTEANKEKNLEQYNKLDQDLNEVKTRVEELDKKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVINGYHGIVMNNF
ECEPAFYTCVEVTAGTRLFYHIVETDEVSTKILMEFNKMNLPGEVTFLPLSKLDVRDTAY
PETNDAIPMISKLRYSPNFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDMRKAEEELTELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQRRVDDLNDEIRQLQQDNRQLLNERIKLEGIMTRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELDGINKRVKETLSRSEDLDSLIDKTEGEIKDHIKS
MERWKNIEKEQNDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
TLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQDELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDAEGSQSQDEEGGADSERGS
GSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYL
FDEIDQALDAQHRKAVSDMIVELAGHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVI
TAEQAKDFVEDDTTHG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcaaacaggtcatcattcaggggttccgaagttaccgggaccaaactgttgtt
gatccattcagcccaaagcacaacgtcatcgttggaagaaatgggtctggaaaaagtaac
tttttctatgccatccagttcgtcctcagtgatgaattcagtcatctgcggcctgaacag
cgtctggcccttctgcatgaaggaactggtccacgcgtcatatcagcttttgtggaaatt
atttttgacaactctgataaccggctgccgattgacaaagaggaagtctctcttcgtcgt
gtcattggtgcaaagaaggaccaatatttcttggacaagaagatggtgactaagaacgac
gtcatgaaccttctggaaagcgccggtttctctcgcagtaacccatactacatcgtcaaa
cagggaaagattaatcagatggccacagcacctgactcccagcggctgaagctcctgaga
gaagtggcgggaacacgggtgtatgatgaacgaaaggaggagagcatttctctcatgaag
gaaacagagggcaagcgagaaaagatcaatgagttgttgaagtacatcgaggagcgtctt
cacactctggaagatgagaaggaagagctggcccagtaccagaagtgggacaagatgagg
agagctctggagtacaccatttacaaccaggagctgaatgaaacccgcgccaaactggac
gagttgtccagcaagagagagacctgtggagacaaatccagacaactgcgggatgcccag
caagatgctagagacaaagtggaggaaacggagcgtgttgtgcgggagctgaagtccaag
atctctgccatgaaggaggagcgagagcaactgtcggcagagcgccaggagcagatcaag
cagaggaccaagctggagctgaaggccaaggacctgcaggacgagctggcaggcaacagc
gaacagaggaaacgcctgctgaaggagcgtcagaagcttctggaaaaaatcgaagagaag
caaaaggagctgcaggagactgaacctaaattcaacatggtgaaggagaaagaggagcgg
ggcatttccagactcgcccaggccacgcaggagaggaccgacctgtatgccaagcagggc
cgtggcagtcagttcacctccaaggaggagagagacaagtggatcaagaaagagctgaag
tctctggaccaggccatcaacgataaaaagaggcagatcgcagccatccacaaagacctg
gaggacacagaggctaacaaagagaagaacctggagcagtacaataaacttgaccaagat
ttaaatgaggttaaaactcgtgttgaagagctggacaagaagtattacgaggtgaaaaac
aagaaagatgaactccagagtgaaagaaactacctgtggcgtgaagagaatgcggagcag
caggccctggcagccaaacgggaggatctggagaagaagcagcagctcctccgagccgcc
actggcaaggccattctgaacggcattgacagcatcaataaagtcctggaacactttcgg
aggaagggcatcaaccagcatgtcatcaatggttaccatggcattgtcatgaataacttt
gagtgtgagcctgctttctacacttgtgtggaggtgactgctggaacaaggttgttttac
cacatcgtagaaacagatgaagtcagcaccaaaatactgatggagttcaacaaaatgaac
ttgcctggagaagtcacgttccttccactgagcaagctggatgtcagggacacggcctac
ccagaaaccaatgatgccatccccatgatcagcaagctgcgctacagccccaactttgac
aaggccttcaagcatgtgtttggaaagaccctaatttgtcgcagcatggaagtttccacc
cagctagcccgagctttcaccatggactgtatcactctggagggtgatcaggtcagccac
cgtggcgctctgactggaggctactacgatacgagaaagtctcgcctagagctccagaaa
gacatgaggaaggctgaggaggagctgactgagctggaagccaagctgaatgaaaacctg
cgcaggaacatcgaacgcatcaacaacgagattgaccagctgatgaatcagatgcagcag
atcgagacccagcagaggaagtttaaggcatccagagacagtattctgtctgaaatgaag
atgctgaaggagaagaggcagcagtcagagaagacatttatgcccaagcaacgcagtctc
caaagtctggaggccagccttcatgccatggagtccaccagggagtccttgaaggctgaa
ctgggtacagatctcctctctcagctcagtcttgaggaccagaggcgtgtagacgacctg
aacgatgagattcgacagttacaacaggacaacagacaacttctgaatgagagaatcaag
ttggaggggatcatgacccgggtggagacctatctgaatgagaacttacggaagagactg
gatcaagtggagcaggagctgaatgagctgcgggagacggagggaggaacggtgctcacg
gccaccacgtctgagctggacggcatcaacaaacgcgtcaaagaaactctgtcgcggtca
gaagatctggactctctgattgacaagacggaaggagagatcaaggatcacatcaagagc
atggagcgctggaagaacattgagaaggagcagaacgacgccatcaaccatgacaccaag
gagctggagaagatgaccaaccggcagggcatgctgctgaagaagaaggaggagtgcatg
aagaagatcagagagctgggctcgctgcctcaggaggcctttgagaagtaccagaccctc
actctcaaacagctcttccgaaaactggagcagtgcaacacggagctgaagaagtacagc
cacgtcaacaagaaagctctggatcagttcgtcaacttctccgaacagaaagagaagctc
atcaagcggcaggatgagctcgaccgtggctacaagtccatcatggagctcatgaacgtc
ctggagctgcgcaagtatgaggccatccagctcaccttcaaacaggtgtccaagaacttc
agtgaggttttccagaagctggttcctggtgggaaggccacactggtgatgaagaagggc
gatgctgaaggcagccagtcccaggatgaagagggaggcgcagacagcgagaggggctcc
ggctcacagagcagcgtcccctctgtggaccagttcaccggagtcggcattcgagtgtca
ttcacggggaagcagggcgagatgagggagatgcagcagctgtcggggggacagaagtct
ctggtggctttggccctcatctttgccatccagaagtgtgaccccgcccctttctacctg
tttgatgaaatcgaccaggcactggacgctcagcacagaaaagccgtctcagacatgatc
gtggagctggcaggtcacgctcagttcatcaccaccaccttcaggcccgagctgctggag
tccgccgacaagttctacggagtcaagttcaggaacaaggtgagtcacatcgacgtgatc
acggcggagcaggccaaagacttcgtggaagacgacaccacccacggctaa
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