Oryzias latipes (Japanese medaka): 100125475
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Entry
100125475 CDS
T02443
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X2
KO
K20053
very low-density lipoprotein receptor
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
100125475 (vldlr)
Membrane trafficking [BR:
ola04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100125475 (vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Motif
Other DBs
NCBI-GeneID:
100125475
NCBI-ProteinID:
XP_004075190
UniProt:
H2MJ58
LinkDB
All DBs
Position
12:28185113..28216182
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AA seq
847 aa
AA seq
DB search
MVTSAAGVLLLPVLLILLCLHHRGHVHATKTECETNQFQCGNGRCIPSIWQCDGEDDCTD
GSDEKSCVQKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESLEICHMRTCRVNEFSC
GAGTTQCIPVSWKCDGEKDCDNGDDEVNCGNITCSPSEFTCTSGRCISQNFVCNSEDDCG
DGSDEVDCAPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESLSRCGRHPTPPAKCS
SSEMQCLSGECIHKKWRCDGDPDCKDGSDEANCPVRTCGPDQFKCEDGSCIPGSRQCNGI
RDCTDGSDEVDCKNLSQCSGPEKFKCRSGECIDMSKVCNKVRDCPDWSDEPIKECNVNEC
LLNNGGCSHICKDMVIGFECDCTPGLQLIDHKTCGDINECMNPGICSQICINLKGGYKCE
CHNGYQMDPTTGVCKAVGKEPCLIFTNRRDVRRLGLERKEYTQIVKQQRNAVALDADFNQ
QTIFWADLGQKAIFSTVLDKRGDVGTHKTVIENVQTPVGIAVDWIYRNFYWTDLGTKTIS
VSNFNGTIQKVLFNQGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVETD
IQWPNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSPEYLAHPFALTVFEDRVF
WTDGENQAIYGANKFSGSDVVTLASNLNDPQDIIVYHELIQLSGTNWCTERGVNGGCSFM
CLPAPQVNKHSPKYTCVCPEGQELAADGFRCRPEANGSTSIQVDSTARGSAGAWAILPVL
LLAVAGAAGYLTWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDITRHGANVGHTYPAISIV
STEDDSS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtccgcagcgggggtcctgctgctgccggtgctcctgatcctgctgtgcctc
caccaccgcggtcacgttcacgctacaaagacggagtgtgaaaccaatcagtttcagtgt
ggaaacggccgctgcatcccgtctatatggcagtgtgatggagaggacgactgcaccgat
ggcagcgacgaaaaatcatgcgttcagaagacctgcgccgaggtggactttgtttgtcgg
aatggtcagtgtgtcccgaagcggtggcattgtgacggcgagccagactgtgaggacgga
tctgacgagagcttggaaatctgtcacatgaggacatgccgtgtgaatgagtttagctgt
ggagccggcaccactcagtgcattcccgtctcctggaaatgcgatggagagaaggactgc
gacaacggagacgacgaggtcaactgtggtaacatcacctgttcccccagtgagttcacc
tgcaccagtggccgctgcatttcccagaactttgtgtgcaacagtgaagatgactgtggc
gacggctcggatgaggtggactgtgcgccgtcctcgtgtggacccagcgagttccagtgt
ggaaactcctcctgcatccctgccagctgggtgtgtgacgacgatgtggactgtcaggat
cagtcggatgagtctctgtctcggtgcggccgtcacccaacacctccagccaaatgctcc
tcaagtgaaatgcagtgcctctctggagaatgcatccacaaaaagtggcggtgtgacgga
gatcctgactgcaaggacggcagcgacgaagccaactgtcctgttcgcacctgtgggccg
gaccagttcaaatgtgaagatggaagctgcatcccgggcagcaggcagtgcaacggcata
agagactgcaccgacggttccgatgaagtcgactgcaagaacctgtctcagtgcagcggt
ccagagaaattcaagtgccgcagtggggaatgcattgatatgagcaaagtgtgcaacaaa
gtccgggactgtcctgactggagcgacgaacccatcaaggaatgcaatgtgaatgagtgt
ctgctgaacaacggcggctgctctcacatctgcaaagacatggtgatcggcttcgagtgt
gactgcacacctggactccagctcatcgaccacaagacctgcggagacatcaatgagtgc
atgaatcctggcatttgcagtcagatctgcatcaacctgaagggggggtacaagtgtgag
tgccacaacggctaccagatggatccaaccaccggcgtctgcaaggctgtgggtaaagag
ccctgtctgatcttcaccaaccgccgtgatgtccgtcgtctgggcctggagcggaaagag
tacactcagatagtgaagcagcagaggaacgctgtggctttagacgcagactttaaccag
cagaccatcttctgggctgatcttggtcaaaaggccatattcagcaccgtcctggataaa
cgcggagacgtcgggacgcacaagacggtgatcgaaaacgtccaaactcccgtgggaatc
gcagtggactggatttataggaatttttactggaccgacctgggaaccaaaaccatttct
gtgagcaattttaacggaaccatacagaaagttctgttcaaccaaggcctgaaagaaccc
gcctccattgctgtggatccattgtccgggtttctgtactggtccgactggggggagccg
gccaagattgagaagtccggcatgaacggagtcgacagacaagttctggtggagacggat
atccagtggcccaatggaatcactctggatctgatcaaaggcagactgtactgggtggac
tcaaagctgcacatgctctgcagtgtcgacctgaatggagacaacaggaagaaggtgctc
cagtctccagagtacctggctcatccctttgctctcacagtttttgaggaccgggttttc
tggacagatggagaaaaccaggcgatctacggtgcaaacaagttctcggggtctgatgtg
gtgacgttggccagcaatctgaacgaccctcaggacatcatcgtgtaccacgagctgatt
cagttatcgggtaccaactggtgcacagagaggggggtaaatggaggctgcagcttcatg
tgtctgcctgcaccacaagtcaacaaacactcccccaaatacacctgtgtgtgtccggag
ggacaggagctggcagctgacggcttccgctgcagaccagaggctaatgggagcacgtcc
atccaggtggactccaccgccagagggtctgctggcgcctgggccatcctgcccgtcttg
ctcctggccgtggctggagctgcaggttacctgacgtggagaaactggcagctcaggaac
cagaagagcatgaacttcgacaacccggtctacctgaagaccacagaggaagacctgaac
attgacataacgcggcacggtgccaacgtgggacacacttaccctgcgatttccatcgtc
agcacagaagacgactcgtcctga
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