Oryzias latipes (Japanese medaka): 100304449
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Entry
100304449 CDS
T02443
Symbol
sox6b
Name
(RefSeq) SRY-box containing gene 6b
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
100304449 (sox6b)
Transcription factors [BR:
ola03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100304449 (sox6b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DUF4054
Motif
Other DBs
NCBI-GeneID:
100304449
NCBI-ProteinID:
NP_001158340
UniProt:
C3VV10
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All DBs
Position
3:19106109..19183485
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AA seq
804 aa
AA seq
DB search
MSSKQATSPFASVVDGDDAMSQEHLTWEKEESSEAHGTPQLPLHSLLHGKAPDEMQPLSS
VPTESDWDSLMSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGARERSDLLSGSAFGTPE
RRKGSLADVVDTLKQKKLEEMTKTEQDETSCMEKLLSKDWKEKMERLNTSELLGEVKGTP
ESLAEKEHQLSTMISQLISLREQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQKIYKV
SICSLKLRPLSDLCSLSVQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGMSYKP
GDNYPVQFIPSTMAAAAASGLSPLQLQVFNALISSPVLCAQATQRSTYAFVSADVCMDKF
KKSELDEKSQQLYAAHFASMQVSPGAKMPPLPQPLGASGPISPSSLKNDKSSSSPIAQVK
KKNTSTYNVCYFSVTASWWSSLLQAINLWSFNKAFSFLPKLCGHGCYSYNSSTPNSCLHS
PARFGCSDTIQKAEKKQAAKQKKKTHRLKLHFYSFLLKEKSSTSISTIFLTQCYTKKERG
HFESLGQHLSKLGEEGKIGHRVIDLTRPEDLDGGPGSAEARVFRESRGRNSNEPHIKRPM
NAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKY
PNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQPPQIPITTSASMVYPG
AITMATTTPSPQMTSECSSASASPEPSIPVIQSTYNMKLEPSTMANNSEPVNGEDEMDMY
EDFEDEPKSDYSSENDTQEPVSTN
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctaagcaggccacgtctccttttgcctctgtggttgatggtgatgatgccatg
agtcaggagcacttgacctgggagaaagaagagagttcagaggcccacggcacaccacag
ctccccctgcacagcctgcttcatggaaaggccccagatgaaatgcagcctctgagcagt
gtaccgacagagagcgactgggacagcctaatgtcagcacagcagcgcatggaatctgac
agcaacaaagtatgctccttgtactcctttcggaacaattccacctctccacacaagcct
gaggagggggcccgggagcgaagtgacttgctgagcggatcagcttttggaactcctgag
cggcgcaaaggaagtctggcagacgtggtggatacactgaagcagaagaaactggaggag
atgacaaagacagagcaagacgaaacctcctgcatggagaaacttctttcaaaagactgg
aaggagaagatggaaaggctaaacaccagtgagctgctgggagaagtaaaaggaactcca
gagagcctggcagaaaaggaacatcagctttctacaatgatcagccagctgatcagcctg
cgagagcagcttctggctgcccacgatgagcagaagaagctggccgcctcacagatggag
aagcagaggcagcaaatggagctggctcgtcagcaacaggagcagaaaatatacaaagtc
agtatttgcagcttaaagcttaggcctctctctgatctttgctctctatctgttcagcag
gtccagggtcacatgcctccattgatgatccccatttttccacacgaccaacgcactctg
gcagcagcagctgccgcccagcaaggctttcttttccctccagggatgtcttataaacca
ggtgataactacccggtgcagttcattccatccacaatggcagctgcagcagcgtcagga
ctcagccccctccagcttcaggtatttaatgccctcatatccagtccagtgctttgtgcc
caggccactcagagaagcacatacgcatttgtgtctgcagatgtgtgcatggataaattt
aagaaaagtgagctggatgagaaaagtcaacaactgtatgccgcccactttgccagcatg
caggtctctcctggtgccaagatgccgccactcccccagccccttggtgccagtgggccc
atctccccctcttcattgaagaatgacaagagttcctccagccccattgctcaagtcaag
aaaaaaaatacaagcacctacaatgtttgctacttcagtgttacagccagctggtggtcc
agcctcttacaggccatcaatctctggagctttaacaaggccttctcttttttaccaaaa
ctctgtgggcatggttgctatagctataacagctccacaccaaattcttgtttgcattct
cctgcaaggtttggctgctcagacacaatacaaaaggcagaaaaaaagcaggctgcaaag
cagaaaaaaaaaacacatcgcttgaagttacacttttatagttttcttttaaaggaaaaa
agttcaacctcaatttcaaccatatttctaacacagtgttataccaaaaaggagagggga
cactttgaaagccttgggcagcacctcagtaaactgggagaggaaggaaagattggccac
agggttatcgacctcaccagaccagaggatctagacggaggccctggatctgctgaggcg
cgtgtcttcagggagtcgcgcggacggaacagcaatgagcctcacattaaacggcccatg
aatgccttcatggtttgggccaaggatgagcggcgtaagatcctccaggctttccccgat
atgcacaactccaatataagcaaaattttggggtctcggtggaagtccatgtctaaccag
gacaagcagccatactacgaagagcaggctcgcctgagcaagctccatctagagaagtat
ccaaactacaagtacaagccgaggcctaagaggacctgcattattgacggaaaaaaactt
cgcattggggagtataagcagatgatgcgctctcgacggcaagagatgaggcagttcttt
actgtggggcagccaccacaaattcccatcaccaccagcgccagtatggtctacccaggg
gcaatcaccatggcaaccaccacaccctcacctcagatgacgtcggagtgctcaagtgcc
tcagcgagtcctgagccctccattcccgtcattcaaagcacctacaacatgaagctagag
cccagcaccatggcaaacaacagcgaaccggtcaacggcgaggacgagatggacatgtac
gaagattttgaggacgagcctaaatcagactatagcagtgaaaatgacacacaagagcca
gtcagcaccaactga
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