Oryzias latipes (Japanese medaka): 100304468
Help
Entry
100304468 CDS
T02443
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100304468 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
100304468 (mtrex)
03041 Spliceosome [BR:
ola03041
]
100304468 (mtrex)
03009 Ribosome biogenesis [BR:
ola03009
]
100304468 (mtrex)
03016 Transfer RNA biogenesis [BR:
ola03016
]
100304468 (mtrex)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100304468 (mtrex)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100304468 (mtrex)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100304468 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
100304468 (mtrex)
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
Pre-60S particles
Helicases
100304468 (mtrex)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100304468 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
100304468
NCBI-ProteinID:
NP_001158354
UniProt:
C5NN13
LinkDB
All DBs
Position
12:8967232..8987231
Genome browser
AA seq
1036 aa
AA seq
DB search
MADLFGEGLFNVFDEEQQSSSSKKTPASAATETEKTAGKYGADKDAGSSTRTKREADDDP
GEEVVFGKKPRNEAASVNDLNLSEFMPQIKVEQVDTVEGCSHEVALPADYEFKPLKQRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLITGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDVGDSGGSGGGKWDPRGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEEQYHTIEIPNEESVVTYFKIRQQLAKLSKEIQEFIHKPKYCLPFLQPGRLVKVKKD
DADFGWGVVVNFCKKTNVKASTDSDPLYVVEVLLHCSKESMKNAATEAAKPAPPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCEKKALIATEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMMFNGLFNDLSVEQAT
ALLSCFVFQENASEIPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLSQFKSHL
MDVVFAWANGSSFSQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctatttggggaaggactgttcaacgtttttgacgaagagcaacaaagttcg
tccagcaaaaagactcccgcgagtgcagctactgagacagagaaaactgcaggtaaatat
ggcgctgacaaagatgcaggctcctccacccggacaaagagggaggcagatgatgatccg
ggggaggaggtggtttttgggaagaaacctcgaaatgaggcggcctcagttaatgaccta
aatctttcagagtttatgcctcaaataaaagtggagcaggtggacacagtggaaggatgt
tcgcatgaggttgctttgcctgcggattacgagtttaaacctctaaaacaaagagttggg
aaagcagctaaggaataccccttcgtactcgatcctttccagcgtgaggccatcttatgc
atcgacaacaaccagtctgtgcttgtgtctgcacacacctctgccggaaaaactgtttgt
gctgaatatgccattgcgctggctctacgagaaaagcagagagtcatcttcacaagccca
atcaaggcgctctccaatcagaagtacagagagatgtatgaggagtttcaggatgtgggt
ctgatcacaggagacgtcaccatcaaccccaccgcctcttgtcttgtcatgactacagag
atcctgaggagcatgctgtaccggggctcggagatcatgagagaagtagcatgggtcatc
tttgatgaaatccattacatgagggatgcagaacgtggtgtggtttgggaggaaaccatc
attcttcttcccgacaacgtacattatgtgtttttgtctgccaccattcctaatgctagg
cagtttgcagagtggatctgccatttgcacaagcagccatgccatgtggtttacacggat
taccgccccactcctttgcagcactacatctttccagcaggtggcgatggacttcactta
gttgttgatgagaatggcgactttagagaagacaatttcaacacagccatgcaggtgctg
agagatgttggagattctgggggcagtggcggcggcaagtgggacccgagaggacgaaaa
ggaggcaccaaaggtccatctagtgtttttaagatcgtgaagatgatcatggagaggaac
ttccagcctgttatcatcttcagcttcagcaaaaaggaatgtgaggcctatgctctacaa
gtggccaaactcgacttcaacactgatgatgagaaacgtctggtggaagaagtcttcaac
aatgcggtggactgcctctcggatgaggacaagaaactgcctcaggtggaacatgttttg
ccgctattgaaaagagggataggtatccatcatggcggtctactgcccattctgaaagag
acgatagaaattctgttctctgaaggtttgctcaaggcgctgtttgccactgaaaccttt
gccatgggaatcaacatgccagcccgcactgtgctcttcaccagcgctcgcaaatttgat
ggcaagagccaccgctttatcacgtcaggcgagtacatccagatgtcaggccgtgctgga
agaagagggatggacgacagggggattgttattttcatggtggatgagaagatgagtcct
gctgtggggaaacagcttctaaagggctcagcagaccctttgaacagcgctttccatctg
acctacaacatggtgctgaacctgctgcgagtggaagagatcaacccagagtacatgctg
gagaagtccttctaccagttccagcactacagggccctgcccggcgtggtggagaaaatt
aagaagttggaggagcagtaccacaccattgagatcccgaacgaagagagcgtggtcacc
tactttaagatcaggcagcagttagccaaactgagcaaagagatacaagagttcatccac
aagcccaaatactgcctgcccttcttgcagcccggacggctcgtgaaggttaaaaaggat
gatgcagacttcggttggggagttgttgtaaacttctgcaaaaagacaaatgtaaaggcc
agcacagactcggacccgctgtatgtagtggaggtattgctccactgtagcaaggaaagc
atgaaaaacgctgcaactgaagctgccaaacctgctccaccaggggagactggagagatg
caggtggttccagtgatgctccacctcctcacatccatcagctcagttcgtctgtacatc
cccaaagatctgaggccctttgacaacagacagctgatgctcaagtccatacaggaggtg
cagaaacgtttcccagatggcgttcctctgttagaccccatcgatgacatgggcatcaaa
gaccccgggctgaaaaaagtcattcagaaggtggaggcctttgagcaccgcatgtacacc
cacccgctgcacagtgaccccaacttggagtcggtttactctctctgcgagaaaaaagct
ctgattgccacagaggtccgaacggccaaacgagagctgaagaaggctcgcaccgtcctg
cagatggatgagctgaaatgccggaagagggttctgcggagactcggcttcgccagtccc
tccgatgtcatcgagatgaaggggcgggtcgcctgtgaaatcagcagtggtgatgagctt
ctgctgacagagatgatgttcaacggcctcttcaacgacctgtcagtggaacaggccacc
gctctgctgtcctgctttgtcttccaggagaacgccagcgagattcccaaactgaccgaa
cagctggcagcgccgctcagacagatgcaggagtgtgcgaagcgcatcgccaaagtgtcg
gcagacgccaagctggaagtggacgaggagacgtatctgagccagttcaagtcccacctg
atggacgtggtctttgcctgggccaacgggtccagcttctcccagatctgcaaaatgacc
gacgtctttgaaggaagcatcatccgctgcatgcgccgtttagaggaagtgctgcgacag
atgtgctcggctgccaaagccattggaaacacggaactggagaacaagtttgcagaagga
ataacgaagataaagagagacatcgtctttgctgctagtctctatttatag
DBGET
integrated database retrieval system
