Oryzias latipes (Japanese medaka): 100415780
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Entry
100415780 CDS
T02443
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain precursor
KO
K06237
collagen type IV alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04382
Cornified envelope formation
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100415780 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100415780 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100415780 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100415780 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
100415780 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
100415780 (col4a1)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100415780 (col4a1)
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100415780 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100415780
NCBI-ProteinID:
NP_001170943
UniProt:
D2KY92
LinkDB
All DBs
Position
21:complement(25841207..25894477)
Genome browser
AA seq
1639 aa
AA seq
DB search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NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaccgtgcgcctctctgttaacgctggcggctctccacgcaaacttataccta
acaaaagctgagggttgtggagcatcctgtggaaaatgtgactgcagcggagtgaaagga
gataagggggagcgtggatttcctggtcttcagggcaacatggggtttccaggaatgcag
ggaccagaggggcctccgggaccaatgggatccaagggggatctcggtgagcctggagct
cctggactcaaaggagtgcggggtcctcctggtctgcctggtttcccaggtcacccaggg
caaccaggcatcaatgggcacgatggtcctccaggtccacccggtatcccaggatgtaac
ggaactaagggggatagaggaacagatggattttctggttttcctggccctcaaggacct
cctggaatcccaggatttcctggaatgaagggagaccccggtggtgtgattgggtttgtt
cccacgaaaggagagaaggggtatcctggctcacctggacaaccaggagcaatcggtttt
ccaggacctgtcggacctccagggccccgaggatatccagggttaaaaggagatgctggc
ccgcctggtcctcctggagaaaaaggtgacagattggcttttgtgagcgcaaaaggagat
aagggtgaaccgggactccagggcccacccggtccccccggcccttatcaggaagcagaa
ggaacatctacaatcattataaaaggacagccgggtccacctggagatcccggtgacaga
ggagaaaaaggcttttgcctcccttatcagcatgggattaaaggtgaaccaggccaacct
ggaccaagaggtaaacctggaaaagatggcgaggacggtcaaaggggggagacgggctat
cctgggcctccaggattccctggaaccccagggcaaaagggggatcaaggaccaccagga
tttggcgaaggtgcacctggtccacctggcccacctggtctgccaggatttccaggcgaa
aaaggttttcctggtccacaaggagaaccgggtccagcaggtcgtcacattgaaggacct
cgaggagaaccgggccaaaaaggcgatgttgggcaaaagggtgacagaggggtattagga
gagtctcttcctggaccaccgggacaaccagggaaaaaaggagaacctggaccgcctggc
caacctgttgatccactggcatgtatccttgcgaagggaaactctggtccacctggactt
cctggtttacaaggggaagaaggacaaaaaggtgataaaggagacacgtgtgttcactgt
gagaccagtggtataattggagaacctggaccccaaggccctaaaggagatcaaggacct
cctggtccagttggcagcaaaggagacaaaggtcaaaccggacctcctggagaaaatgga
agacctggttctcaaggaaatcctggattaatgggagccccgggtgctgtgggtgcacca
ggagatgttgtcattgctcctggtcttaagggggagaaaggctttcctggtcgtcctggt
ctgcagggtcagcctggcctggatggactgccaggcagagacggccttccaggtcagccc
ggcctcaagggagaacccgctaaagaaggcatcaagggtgaacgcggacgagatggagag
ccgggtcaaattggacctccaggtgaaagaggtcctccaggtatagcaggctttggccaa
cctggagagcgtggcgataaaggcggtcagggaagaccaggaactcctggagctcctgga
cttccaggtctaaaaggtgagccaggcaaaggagtgagcattcctggacctcagggagta
cccggaccacggggagaaaatggtttacctggaattcaaggtgaaagaggattacaaggg
gacccagggctgcctggttttcctggagacaaaggagaacaaggaccaccaggaattgga
tttccaggcccaagtggtcccaaagggtatagtggagctcctggagccccaggattacct
ggagagccaggaagaccagggaaggatggcttaactggacaagctggttcccccgggcaa
aaaggtgaacctggccgaggtctaccgggtcctaaaggttttcaagggcccccaggaatt
actggatttccgggacagaaaggaaacattggtttgcctggtattcctggacaagaagga
cagacaggaccaccaggacctcagggtctcaaaggtgatattggccctcctggacttcct
gggcagactggtccaccgggtgctcctggaaaaggcttgcctggacctcctggaccacaa
ggaccacatggagagcctggaccacatgggagggaaggcataaagggagataaaggcttt
ccaggtactcctggtcttgacatgcctgggcctcaaggagagaaaggagtccctggattc
ccaggcatcccggggggtagaggactgccgggcccaccgggctcagcaggcagagacgga
caaattggaacccaaggtcggaaaggtgaaatgggcaacatgggaatgccgggagtacaa
ggatttcctggatctccaggtttacctggatctccaggtttgagaggtgatcctggattt
actggaccaagtggagaaagtggagaacctggacctaagggtgaaagaggagagccaggt
ctacaaggtccccctggggaaatgaatgatgtagatatggagcacatgaagggggaaaaa
ggagacactggagatagaggcaacccaggtgtatcaggagatcgaggctaccaaggggtg
caaggagaccctggaatgcctggaaaggatggagaacctggatcaccaggacaaccaggt
gacaaaggagatcgaggttttccaggagaaccaggaagcatgggacctcctggacaaaaa
ggctctttgggagaaatgggtattccaggtccagctggtccaaagggtactaaaggcgat
tttgggagaccgggacatcctggatttaaaggtctagatggtgaaaagggagacacgggg
tcacctggtgagccaggcatcggcgtaccaggtgtcccaggacaaaagggtcacaccggt
gacccgggagtcccggggtctcctggagaaaaaggtgaaaagggttattcaggaatgcct
ggttctcctggagttcaaggacccaagggagacaaaggaagcattgggtatcaaggtcaa
gcaggcagaccaggagacaaaggtgatcctggacttcctgggtctgtgggagaaccaggt
cgtgatggacgacccggcgaaggtggtctgcaggggccttcaggccccaggggagataaa
ggtgagcctggagaggacggaattcctggatccactggggagagaggagacccaggtttg
cctggtcggggtgttcctggacctcctggagaacttggtaccaagggtgacaaaggtagc
tctggtcttcctggggccccaggtaatccaggtgtccctggaatcaaaggggacaagggc
tatccaggtccacagggaccgcagggagagacaggggagcgaggtcttcctggcatttct
ttgcagggacctaaaggagacaggggagaaacaggaaatcagggagcaccaggacccaaa
ggagtgataggagaagctggctttccaggcagagatggtgaaaagggcgagaaaggcagt
caaggtcttcctggtttccagggagaaacgggacacaagggcgaccctggagttcctgga
cttcctggtcaaactggtcttccaggtattgatggccagaagggtgaaagaggactccaa
ggtgttcctggttttccaggtacaaagggtgaaattggagacatagggttcaaaggagaa
gtgggggacaggggtttcccaggactaaaaggtggtgaaggcccgcctggtcctcctggc
cctcaacttttcataaaaggagatgttggggctccaggaattcaaggcttgccgggccct
caggggccagcagggtttcctggactgaaagggcagcaagggataacaggttttccaggg
cccaaaggtgacaatggagttcctggttatgatggtctgccgggagctaagggagagcct
ggtctgccaggacctcaaggtcccagagggtatcctggccccccaggaccagatggagtt
ccagggcaggtgggtgctcctggcccctcatccatggaccatggcttcctggtaacaagg
cacagccaagcggttgaggtacccctctgtcctgggggaaccaggctcatatatgatggc
tactctctgctctacgtgcaaggcaatgaacgctcccacggacaagacttaggaactgca
ggcagctgcctcaggaaattcagccccatgcccttcctgttctgcaacatcaacaacgtt
tgcaactttgcctctcgcaatgattactcctactggctcacttcgccggagcccatgccc
atgagcatggcacctattacaggggacagcatcaaacccttcatcagcaggtgtgctgta
tgtgaagccccagccatggtgatagcagttcacagccagacgatcaggatcccagaatgc
cccgaaggctgggactctctgtggattggctactcctttgtgatgcacactagtgctggt
gctgaaggttcgggacaggctttggcctctcctggttcctgtctagaggaattccggagc
gctccgttcatcgagtgccacgggcgaggaacctgcaactactatgccaactcttacagc
ttctggctagccaccattgaggacagcaatatgtttaagaaaccaatcccgacaactctt
aaggcaggcgaactccggacacaaataagccggtgtcaggtgtgcatgaagagaacttaa
DBGET
integrated database retrieval system
