Oryzias latipes (Japanese medaka): 100415780
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Entry
100415780 CDS
T02443
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain precursor
KO
K06237
collagen type IV alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100415780 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100415780 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100415780 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
100415780 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
100415780 (col4a1)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100415780 (col4a1)
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100415780 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100415780
NCBI-ProteinID:
NP_001170943
UniProt:
D2KY92
LinkDB
All DBs
Position
21:complement(25841207..25894477)
Genome browser
AA seq
1639 aa
AA seq
DB search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NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaccgtgcgcctctctgttaacgctggcggctctccacgcaaacttataccta
acaaaagctgagggttgtggagcatcctgtggaaaatgtgactgcagcggagtgaaagga
gataagggggagcgtggatttcctggtcttcagggcaacatggggtttccaggaatgcag
ggaccagaggggcctccgggaccaatgggatccaagggggatctcggtgagcctggagct
cctggactcaaaggagtgcggggtcctcctggtctgcctggtttcccaggtcacccaggg
caaccaggcatcaatgggcacgatggtcctccaggtccacccggtatcccaggatgtaac
ggaactaagggggatagaggaacagatggattttctggttttcctggccctcaaggacct
cctggaatcccaggatttcctggaatgaagggagaccccggtggtgtgattgggtttgtt
cccacgaaaggagagaaggggtatcctggctcacctggacaaccaggagcaatcggtttt
ccaggacctgtcggacctccagggccccgaggatatccagggttaaaaggagatgctggc
ccgcctggtcctcctggagaaaaaggtgacagattggcttttgtgagcgcaaaaggagat
aagggtgaaccgggactccagggcccacccggtccccccggcccttatcaggaagcagaa
ggaacatctacaatcattataaaaggacagccgggtccacctggagatcccggtgacaga
ggagaaaaaggcttttgcctcccttatcagcatgggattaaaggtgaaccaggccaacct
ggaccaagaggtaaacctggaaaagatggcgaggacggtcaaaggggggagacgggctat
cctgggcctccaggattccctggaaccccagggcaaaagggggatcaaggaccaccagga
tttggcgaaggtgcacctggtccacctggcccacctggtctgccaggatttccaggcgaa
aaaggttttcctggtccacaaggagaaccgggtccagcaggtcgtcacattgaaggacct
cgaggagaaccgggccaaaaaggcgatgttgggcaaaagggtgacagaggggtattagga
gagtctcttcctggaccaccgggacaaccagggaaaaaaggagaacctggaccgcctggc
caacctgttgatccactggcatgtatccttgcgaagggaaactctggtccacctggactt
cctggtttacaaggggaagaaggacaaaaaggtgataaaggagacacgtgtgttcactgt
gagaccagtggtataattggagaacctggaccccaaggccctaaaggagatcaaggacct
cctggtccagttggcagcaaaggagacaaaggtcaaaccggacctcctggagaaaatgga
agacctggttctcaaggaaatcctggattaatgggagccccgggtgctgtgggtgcacca
ggagatgttgtcattgctcctggtcttaagggggagaaaggctttcctggtcgtcctggt
ctgcagggtcagcctggcctggatggactgccaggcagagacggccttccaggtcagccc
ggcctcaagggagaacccgctaaagaaggcatcaagggtgaacgcggacgagatggagag
ccgggtcaaattggacctccaggtgaaagaggtcctccaggtatagcaggctttggccaa
cctggagagcgtggcgataaaggcggtcagggaagaccaggaactcctggagctcctgga
cttccaggtctaaaaggtgagccaggcaaaggagtgagcattcctggacctcagggagta
cccggaccacggggagaaaatggtttacctggaattcaaggtgaaagaggattacaaggg
gacccagggctgcctggttttcctggagacaaaggagaacaaggaccaccaggaattgga
tttccaggcccaagtggtcccaaagggtatagtggagctcctggagccccaggattacct
ggagagccaggaagaccagggaaggatggcttaactggacaagctggttcccccgggcaa
aaaggtgaacctggccgaggtctaccgggtcctaaaggttttcaagggcccccaggaatt
actggatttccgggacagaaaggaaacattggtttgcctggtattcctggacaagaagga
cagacaggaccaccaggacctcagggtctcaaaggtgatattggccctcctggacttcct
gggcagactggtccaccgggtgctcctggaaaaggcttgcctggacctcctggaccacaa
ggaccacatggagagcctggaccacatgggagggaaggcataaagggagataaaggcttt
ccaggtactcctggtcttgacatgcctgggcctcaaggagagaaaggagtccctggattc
ccaggcatcccggggggtagaggactgccgggcccaccgggctcagcaggcagagacgga
caaattggaacccaaggtcggaaaggtgaaatgggcaacatgggaatgccgggagtacaa
ggatttcctggatctccaggtttacctggatctccaggtttgagaggtgatcctggattt
actggaccaagtggagaaagtggagaacctggacctaagggtgaaagaggagagccaggt
ctacaaggtccccctggggaaatgaatgatgtagatatggagcacatgaagggggaaaaa
ggagacactggagatagaggcaacccaggtgtatcaggagatcgaggctaccaaggggtg
caaggagaccctggaatgcctggaaaggatggagaacctggatcaccaggacaaccaggt
gacaaaggagatcgaggttttccaggagaaccaggaagcatgggacctcctggacaaaaa
ggctctttgggagaaatgggtattccaggtccagctggtccaaagggtactaaaggcgat
tttgggagaccgggacatcctggatttaaaggtctagatggtgaaaagggagacacgggg
tcacctggtgagccaggcatcggcgtaccaggtgtcccaggacaaaagggtcacaccggt
gacccgggagtcccggggtctcctggagaaaaaggtgaaaagggttattcaggaatgcct
ggttctcctggagttcaaggacccaagggagacaaaggaagcattgggtatcaaggtcaa
gcaggcagaccaggagacaaaggtgatcctggacttcctgggtctgtgggagaaccaggt
cgtgatggacgacccggcgaaggtggtctgcaggggccttcaggccccaggggagataaa
ggtgagcctggagaggacggaattcctggatccactggggagagaggagacccaggtttg
cctggtcggggtgttcctggacctcctggagaacttggtaccaagggtgacaaaggtagc
tctggtcttcctggggccccaggtaatccaggtgtccctggaatcaaaggggacaagggc
tatccaggtccacagggaccgcagggagagacaggggagcgaggtcttcctggcatttct
ttgcagggacctaaaggagacaggggagaaacaggaaatcagggagcaccaggacccaaa
ggagtgataggagaagctggctttccaggcagagatggtgaaaagggcgagaaaggcagt
caaggtcttcctggtttccagggagaaacgggacacaagggcgaccctggagttcctgga
cttcctggtcaaactggtcttccaggtattgatggccagaagggtgaaagaggactccaa
ggtgttcctggttttccaggtacaaagggtgaaattggagacatagggttcaaaggagaa
gtgggggacaggggtttcccaggactaaaaggtggtgaaggcccgcctggtcctcctggc
cctcaacttttcataaaaggagatgttggggctccaggaattcaaggcttgccgggccct
caggggccagcagggtttcctggactgaaagggcagcaagggataacaggttttccaggg
cccaaaggtgacaatggagttcctggttatgatggtctgccgggagctaagggagagcct
ggtctgccaggacctcaaggtcccagagggtatcctggccccccaggaccagatggagtt
ccagggcaggtgggtgctcctggcccctcatccatggaccatggcttcctggtaacaagg
cacagccaagcggttgaggtacccctctgtcctgggggaaccaggctcatatatgatggc
tactctctgctctacgtgcaaggcaatgaacgctcccacggacaagacttaggaactgca
ggcagctgcctcaggaaattcagccccatgcccttcctgttctgcaacatcaacaacgtt
tgcaactttgcctctcgcaatgattactcctactggctcacttcgccggagcccatgccc
atgagcatggcacctattacaggggacagcatcaaacccttcatcagcaggtgtgctgta
tgtgaagccccagccatggtgatagcagttcacagccagacgatcaggatcccagaatgc
cccgaaggctgggactctctgtggattggctactcctttgtgatgcacactagtgctggt
gctgaaggttcgggacaggctttggcctctcctggttcctgtctagaggaattccggagc
gctccgttcatcgagtgccacgggcgaggaacctgcaactactatgccaactcttacagc
ttctggctagccaccattgaggacagcaatatgtttaagaaaccaatcccgacaactctt
aaggcaggcgaactccggacacaaataagccggtgtcaggtgtgcatgaagagaacttaa
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integrated database retrieval system
