Oryzias latipes (Japanese medaka): 100529192
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Entry
100529192 CDS
T02443
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100529192
04518 Integrin signaling
100529192
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100529192
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
100529192
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100529192
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100529192
NCBI-ProteinID:
XP_023812895
UniProt:
H2MBQ6
LinkDB
All DBs
Position
7:19314881..19336215
Genome browser
AA seq
1489 aa
AA seq
DB search
MFSLVDSRTVLLLVASQVVLLSVVRCQEDDEDAGACIQDEQQYYNKDVWKPEPCRICVCD
SGAVLCDEIICEEIKECPNPVIPSGECCPICPADASAPIERIGAKGQKGEPGDVANVVGP
KGPPGPMGPPGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGN
FAAQMAGGSDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEPGESGPAGP
MGPRGPPGPSGKPGSDGESGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGA
KGETGAAGAKGEAGASGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGP
VGPAGAPGFPGSPGAKGEAGPTGLRGAEGPQGPRGEAGTPGSPGPAGASGNPGTDGIPGA
KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEVGPKGELGPVGP
QGPPGPAGEEGKRGARGEPGTAGPLGPPGERGPPGNRGFPGQDGLAGAKGAPGDRGVAGA
SGPKGATGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPTGASGEDGRPGPPGPQGARGQ
PGVMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGSAGPPGPAGPAGERGEQGQ
PGPSGFQGLPGPAGPPGEAGKPGDQGVSGEAGAPGAVGQRGERGFPGERGGAGPQGLQGP
RGLPGTPGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGA
PGKDGARGLTGPIGPPGPAGPNGAKGETGSTGPIGAPGVRGAPGDRGEVGPPGPAGFAGP
PGADGQPGAKGELGESGQKGESGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGF
PGAAGRVGPPGPNGNPGPAGPAGAAGKDGPKGTRGDAGPPGRPGDAGLRGPAGPPGEKGE
PGEEGKPGTDGPPGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRGP
PGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGATGIKGERGNTGPAGAPGAPGAPGAPGP
VGPLGKQGDRGENGAQGPAGPPGPAGARGMAGPQGPRGDKGEAGESGERGQKGHRGFTGL
QGLPGPPGPAGDSGPAGPAGPSGAKGPPGPVGPAGKDGNNGQAGPIGPPGPRGRSGETGP
AGPPGNPGPPGPPGPPGPGIDLSAFAGLGQTEKSPDPLRYMRADEASNSLRQHDVEVDST
LKSLNSQIENMRSPDGTQKNPARTCRDLKLCHPEWKSGDFWIDPNLGCTADAIKVFCNME
TGETCVYPRISKVPKKNWWSSKSKNLKHIWFGETISGGFHFSYGQDGPIPNSANIQLNFL
RLLSTEASQNLTYHCKNSIAYMDQATGNLKKALVLQGSNDVEIRAEGNSRFTYSVMEDGC
KRHSGRWSNTVFEYKTMKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttagtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggttagatgtcaggaggacgatgaggatgcaggtgcctgcatccaggatgag
cagcagtattacaataaggatgtgtggaaaccagagccctgccgcatctgtgtgtgtgac
agcggagcggttctgtgtgatgaaattatctgcgaggagatcaaagagtgccccaaccct
gtcatcccatctggagagtgctgccccatctgcccggctgatgccagtgcgcccattgag
aggattggtgcaaagggccaaaaaggagaaccaggagacgttgcaaatgttgtaggacct
aagggaccaccaggcccaatgggccccccaggtgagcaaggaccacgcggagaagctggc
gctaagggtgataagggaaatcctggacctcgaggaagagatggtgagcctggcacccct
ggaaaccccggaccccctggcccacctggaccacctgggccaccaggacttggagggaac
tttgctgctcagatggctgggggttcagatgagaaggccggcggtgcgcagatgggagtg
atgcaaggaccaatgggtcccatgggtcctcgtggtccccctggaccttccggtgctccg
ggaccacagggtttccaaggtgccccgggggagcctggagagtcaggtccagctggacct
atgggacctcgtggaccacctggaccttctgggaaaccaggaagtgacggagaatctgga
aaaccgggaaaacctggtgagcgtggacctgcagggcctcagggagcccgcggattccct
ggaactcctggacttcctggaatcaaaggacacagaggtcaccctggcctggatggagct
aaaggagaaactggtgctgcaggagccaagggtgaggctggtgcttctggagaaaatggt
gcacctggacccatgggtccacgtggtctgcctggtgagaggggtcgccctggtgctgct
ggagctgctggtgcccgtggaaacgacggcctgcctggtcctgctggtccacctggccca
gttggtcctgcaggagctcctggcttcccaggatccccaggagccaagggagaagctggc
ccaactggtcttcgaggagctgaaggaccacagggaccccgtggagaggccggaacacca
ggatctcccggacctgccggagcatcgggtaacccaggaactgatggtatccctggagca
aaaggatcagctggtgctcctggtattgctggtgctccaggattccctggccctcggggc
ccaccaggaccacagggagcaactgggcctttgggccccaaaggacagtctggagaccct
ggtcttcctggtttcaaaggtgaagttggaccaaagggagagcttggccctgttggtcct
caaggtcctcctggccctgctggagaggaaggaaagaggggtgcaagaggagaacctggc
actgcaggaccacttggacctcctggagaaagagggccacctggtaaccgtggtttccct
ggtcaagatggtctggctggtgccaagggagctcctggtgaccgtggtgtcgctggtgct
tctggccctaaaggtgccactggagatcctgggcgcactggagagcctggtctccctgga
gccagaggtcttactggtcgtcctggagatgctggtcctcaaggcaaagttggacctact
ggggcttctggtgaggacggtcgccccggcccacctggccctcagggagcgcgtggacag
cctggagtgatggggttccctggaccaaagggagctaatggtgaaccaggaaaaccggga
gagaaggggcttgttggtcgtcctggtttgaggggtctgcctggaaaagatggcgagact
ggctctgcaggacctcccggccctgctggaccagctggagaaagaggagagcaaggacag
cctggaccttctggcttccaaggtctacctggaccagctggacctccaggagaggctgga
aagcctggagaccagggtgtttctggagaggctggtgctcccggtgctgttggacaaaga
ggtgagcgtggttttcctggtgagagaggcggtgctggacctcagggtctccagggccct
cgtggacttccaggaacacctggaagtgatggaccaaagggagcaataggaccagcgggt
gctgccggaccccagggccccccaggtctccagggtatgcctggagaaagaggagctggt
ggaattccaggagcgaaaggagacagaggtgacaatgggcagaagggaccagaaggtgct
cctggaaaggatggtgcaagaggtttgactggccctattggtcctcctggcccagctgga
cctaacggtgccaagggtgagactggatctactggccccattggggcccctggtgttcga
ggcgctcctggcgaccgtggtgaggtgggacctccagggcctgctggatttgctggacct
cctggtgcagatggtcagcctggagccaaaggagagcttggagagtctggacagaaaggt
gaatctggtgctccaggacctcagggaccatctggagctcctggacctgtaggacctact
ggtgtatctggacctaaaggagcacgtggtgctcagggagctcctggtgccacaggtttc
cctggagctgctggcagagttggacctcctggccctaatggcaaccctggccctgctggt
cccgctggcgctgctggtaaagatgggccaaagggtactcgtggtgatgccggcccacca
ggtagacctggagatgctggactgcgtggacccgctggacctccaggagagaaaggagag
cctggagaggaaggaaaaccaggtaccgatggacccccgggtcctcagggtctggctgga
tcccgtggtattgtaggtttacctggtcagcgaggagaaagaggcttcccaggtctccct
ggaccatccggagagcctggtaaacagggagcgcctggtggttctggtgaccgtggacct
cctggacctgttgggccacctggactcactggacctgctggagagcctggcagagaggga
actcctggatcagatggacctccgggtagggatggagccactggaatcaagggagagcga
ggaaacaccggcccggctggcgcccctggagctcctggtgctcctggtgctcctggacct
gttggacctcttggcaagcagggtgacagaggagagaatggtgctcaaggacctgctggc
ccacccggaccagctggggctcgaggaatggccgggccacaaggaccacgtggagataag
ggggaggctggtgaatctggagaaagaggacagaagggtcaccgtgggttcaccggtctg
cagggtcttcctggaccccctggtcctgctggagactctggaccggctggacctgcagga
ccaagcggagctaaggggccacctggaccagttggacctgctggcaaagatggaaacaat
ggacaagctggccccattggaccacctggacctcgtggacgctctggagagactggccct
gctggtcctcctggtaatcctggaccccctggtcctcctggtcctccaggccccggcatc
gacctgtctgcctttgccggtctgggtcagactgagaagtctccagatcctctcagatac
atgagggccgatgaggcctccaactccctgaggcagcacgatgttgaggtcgattccacg
ctcaaatccctcaacagtcagatcgagaacatgcgcagtccagacggcacccagaagaac
cctgctcgcacatgcagagacctcaagctgtgtcatcctgagtggaagagtggtgacttc
tggattgatcccaatctgggctgcactgctgacgccatcaaagtcttctgtaacatggag
actggagagacctgtgtctacccaagaatcagcaaagtaccaaagaaaaactggtggagc
agcaagagcaagaatctcaagcacatctggtttggagaaacaatcagcggaggcttccat
ttcagctatggtcaggacggccctattcccaactctgccaacatccagctgaatttccta
aggctcttgtccactgaagcatcccagaacctcacctatcactgcaaaaacagtattgct
tacatggaccaggccacaggaaacctgaagaaggcgttggttctgcagggatccaatgat
gtggaaatccgtgcagagggtaacagccgcttcacctacagtgtgatggaggatggctgc
aagaggcattcaggccggtggagcaataccgtctttgagtacaaaacaatgaaaacatcc
cgcctgccaatcgtggacattgctcccatggacattggaggagcagatcaggaatttgga
gttgacataggccccgtctgctttttgtaa
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integrated database retrieval system
