Oryzias latipes (Japanese medaka): 100682394 Help Entry 100682394         CDS       T02443                                  Symbol col2a1a Name (RefSeq) collagen type II A precursor   KO K19719   collagen type II alpha Organism ola  Oryzias latipes (Japanese medaka) Pathway ola04510   Focal adhesion ola04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:ola00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100682394 (col2a1a)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100682394 (col2a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ola00536]     100682394 (col2a1a) Glycosaminoglycan binding proteins [BR:ola00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100682394 (col2a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  100682394 NCBI-ProteinID:  NP_001233588 UniProt:  G1UH59 LinkDB All DBs Position 5:10252767..10305223 Genome browser AA seq 1421 aa AA seqDB search MISFLESRTVLLLVATQLCLLAVVRCQLDDDRVPGIKGQKGEPGDITDVVGPRGPSGPMG PPGEQGPRGPRGEKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMAGG FDEKAGAAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEPGEPGQSGPMGPRGPPG PPGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGAKGETGAVG AKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPPGPVGPAGAPG FPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGAKGSAGAPG IAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPPGLQGAPGPQG EEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGQKGAPGERGPPGASGAKGATG DPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPG PKGATGEPGKSGEKGLLGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQGQPGPSGFQG LPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGPAGPQGLQGPRGLPGTPG TDGPKGAIGPAGSRGAQGPQGLQGMPGERGAAGIPGPKGDRGDLGEKGPEGAAGKDGARG LTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAGPPGADGQPG TKGEQGEPGQKGEAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATGFPGAAGRVG PPGPNGNPGPAGPAGPPGKDGPKGVRGDPGPAGRQGDAGLRGPAGAPGEKGDAGEDGPNG PSGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRGPPGPVGPPG LTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPVGASGAPGAPGAPGPVGPTGKQG DRGEPGPQGPAGPSGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFTGLQGLPGPPG QAGDQGATGPAGPAGQRGPPGPVGPSGRDGANGLPGPIGPPGPRGRGGDSGPAGPPGNPG PPGPPGPPGPGIDMSAFAGLGQPEKSPDPLRYMRADQAAAGNLRQHDAEVDATIKSLNNQ IENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCNMETGESCVY PNPSSIPRKNWWSSKSRNKHVWFGETMNGGFHFNYGDDSLAPNTAAIQMNFLRLLSTEAS QNLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDSCTEHTGKWG KTVMEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL NT seq 4266 nt NT seq  +upstreamnt  +downstreamnt atgattagttttttggaatccaggactgtactgctacttgtagcaacccaactttgttta ttagccgttgtgagatgtcagctggatgacgaccgagtacctggaattaagggccagaag ggtgagcctggtgacattactgatgttgtaggaccaagaggaccatctggcccaatgggc ccaccaggagagcaaggcccccgcggaccaagaggagagaaaggagagaagggaagtctt ggtcctcgaggcagagatggtgaacctggcacccctggaaaccctggaccccctggacct ccaggaccaaacggaccccctggccttggtggaaactttgctgctcagatggcgggcggt ttcgatgagaaagctggcgcagcacaaatgggagtgatgcaaggaccaatgggccctatg ggacccagaggaccacctggccccacaggatcacctggcccacagggtttccaaggcaac ccaggagaaccaggagaacccggacaatctggccccatgggtccccgtggccctcctgga ccacccggaaaacccggtgatgacggtgaagctgggaaaccaggtaaatcaggagagcgt ggaccttctgggccacagggagctcgagggttcccaggaactccaggtttgcctggcatc aaaggacacagaggttatccaggtcttgatggtgcaaagggagagactggtgctgttggt gccaaaggagaggctggtgctcctggagagagtggtgcacctggaccaatgggacctcgt ggtttgcctggcgagagaggccgtcctggatccactggagctgctggtgcacgtggaaat gatggcttgcccggccccgccggtccaccaggtcctgttggtccagctggagctccaggc ttccccggttcccctggttccaaaggagaagctgggccaacaggtgcccgcggacctgag ggagcacaagggccccgtggagagtccggtactcctggatcacctggaccctccggtgct tctgggaaccctggaactgatggtattcctggagctaaaggatcagctggggctcctggt atcgctggtgctcctggtttccctggtcctcgtgggcctccagggcctcaaggagcaact ggacctcttgggccaaaaggaacatctggagatccaggaattgcaggatttaagggagaa gctggacctaaaggggaaattggacccccaggtcttcaaggagctcctggcccccaagga gaggaaggcaaaagaggacccaggggtgagcctggtgctgctggaccactgggacctcct ggagagagaggagctcctggtaacagaggtttccctggtcaagacggtcttgctggacag aagggagccccaggtgagcgcggtcctcctggagccagtggagccaagggggctaccggt gaccctggccgtcctggagagtctggactacctggcgccagaggtctgactggtcgccca ggtgatgctggaccacaaggcaaagttggaccatcaggagctccgggtgaggatggtcgt cccggacctcctggtcctcaaggagcccgcggacagccaggtgtcatgggattccccgga ccaaagggagcgaccggcgaacctgggaagtctggtgagaaaggacttcttggagccccc ggtctgagaggtctgcctggaaaagatggagaaacggggtctgctggaccacctggcccg gctggtcctgcaggggagagaggggagcaaggacagcctggtccgtcgggcttccagggt ctgcctggacccccgggcccccctggagagggaggcaagcctggtgatcagggtgttcct ggagaagccggagctgctggtgccacaggacccagaggagagcgtgggttccctggagag agaggtcctgctggccctcaaggtctgcagggacccagaggtctacctggaactcctgga actgatgggcccaagggagcaattggccccgctggttctcgcggagctcaaggaccccag ggcctgcagggaatgcctggagaaagaggagctgctggtattcctggacccaaaggagac agaggagatttaggagagaaaggtcctgaaggtgctgccggcaaagatggtgccagaggt ctaactggtcccattggtcctcctggtcctgggggtccaaatggagaaaagggtgaatct ggtcctgctggtccttctggggctcctggtacacgtggtgctcccggagacagaggagag accggacctcctggacctgctggttttgctggacctcctggtgctgatggccaacctgga accaagggagagcagggagaaccagggcagaagggagaggctggcgcacctggaccccaa ggaccatctggtgcaccaggacctgcaggacctactggtgtttctggacctaaaggcgct cggggtgctcagggaccccctggagccactggtttccctggagctgctggacgagtagga cctcctggtccaaatggcaatcccggacctgctggtcctgctggccctcctggtaaagat ggacccaagggtgtgagaggagaccctggacctgcaggaaggcaaggcgatgctggactt cgtggtcctgctggggctcctggagagaaaggagatgccggagaggatggtcctaatggc ccttcaggtccctcgggtcctcaaggactggctggtcagcgcggtattgttggtctgcca ggacagcgaggtgaaaggggtttcccaggtttacctggaccttctggtgagcctggaaag cagggagctcctggaggtccaggagaccgtggacctcctggacccgttggaccacctgga cttacaggacctgctggagaacctggtagagagggcaaccctggatctgatggaccacct ggcagagatggatctgctggaatcaagggtgatcggggtaacaccggccctgtaggtgcc tctggcgccccgggggctccaggggctccaggccctgtgggtcccactggcaaacaagga gacagaggagagccaggcccgcaaggacctgctggaccttcaggacctgcaggagctaga ggaatgcctggaccacaaggacctcgtggtgacaagggtgaggctggagaaggcggtgag agggggcaaaagggacacagaggtttcactggtctgcaaggtctccctggacctccaggt caagctggagaccagggagcaactggacctgctgggcctgctggacaaagaggaccacct ggacctgtgggcccctctggtagagatggcgcaaatggtctaccaggaccaattggacct cctggaccacgtggtcgcggtggagactccggtccggctggtcctcctggaaatccagga ccccctggtcctccaggtcccccaggccctggcattgacatgtctgcgtttgctggtctg ggtcagcctgagaaatcacccgatcctctccggtacatgagggccgaccaggctgctgct ggaaacctccgtcagcacgatgctgaggtcgacgctacaatcaaatctcttaacaatcag attgagaacatccgcagccctgaggggtccaagaagaaccctgcccgcacctgcagagat ctgaagctctgtcatcctgactggaagagcggtgattactggattgatcctaaccaagga tgcacggtagatgcaatcaaagtcttctgcaacatggagacaggggagtcctgtgtctac cccaacccctccagcattcctcgcaagaactggtggtcaagcaagagcagaaacaaacat gtctggtttggagagacgatgaatggaggattccacttcaactatggcgatgacagcttg gcacccaacactgctgccattcaaatgaatttcctgaggctgctgtccaccgaggcttct cagaacctcacgtaccactgtaagaacagcgtggcatacatggatgcctcaacaggcaac ttaaagaaggccttgctgctgcaaggttccaatgatgtggagatcagagctgagggcaac agccgctttacttacagcgtcatggaagacagctgcacggaacacacaggtaaatggggc aagacagtgatggaatacaggtcgcagaagacctcacgtttgcccattgtggacattgcc cccatggatattggtggagcggaccaggagtttggcgtcgacgtgggaccggtctgcttc ttgtaa

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