Oryzias latipes (Japanese medaka): 101155199
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Entry
101155199 CDS
T02443
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03410
Base excision repair
ola03420
Nucleotide excision repair
ola03430
Mismatch repair
ola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101155199 (pold1)
03410 Base excision repair
101155199 (pold1)
03420 Nucleotide excision repair
101155199 (pold1)
03430 Mismatch repair
101155199 (pold1)
03440 Homologous recombination
101155199 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ola03032
]
101155199 (pold1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101155199 (pold1)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
101155199 (pold1)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
101155199 (pold1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
101155199 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
101155199 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
101155199
NCBI-ProteinID:
XP_011476612
UniProt:
H2M6Y3
LinkDB
All DBs
Position
8:complement(14474609..14485511)
Genome browser
AA seq
1107 aa
AA seq
DB search
MAFNKRNGGPPFGGLSQAKRGKMSGEWEDSPSQFEEELLMLEEAEMELEEMESQAGHDVI
PVGDLFSADLNPRWPRPHAPTLNPSSETLVFQQIDLDHYLGASVAGMPGQLQEKVPIIRM
FGVTDNGNSVCCHVHGFAPYFYVPAPNGFKSEFLGEFKRELNSAVLKDMRSNKDNISVTV
LAVDITRKENMYGYHGQQSMDFLRITMAMPRLIAPAKRLLEQGFKFGHFPIQGYQSFEAN
IDFEIRFMVDSNVVGCCWIELPKDKWRLREERSTSTGEVDSQTPVKVSLCQYEVDVAWTD
LISHPAEGEWQRIAPLRVLSFDIECAGRKGIFPEPDKDPVIQIASMVQRQGETEPFIRTV
FTLQSCTSIVGSQILCFTQEKQLLQSWAEFLRTVDPDIITGYNIQNFDFPYLINRAAALK
VTYFPYLGRVRNMKSVLKESNFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTL
NAVSFHFLQEQKEDVQHSIISDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYME
MARVTGVPLSYLLSRGQQIKVVSQLLRQAMKQNLVMPVVKTEGGEDYTGATVIEPEKGYY
SVPITTLDFSSLYPSIMMAHNLCYTTLLQKGSVERLQLSSEDFIKTPTGDQFVKSSVRKG
LLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCL
EISQSVTGFGRQMIERTKQLVESKYTISNGYQADAKVIYGDTDSVMVKLGVATVKEAMEI
GREAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRR
DNCPLVANLINTCLQKILIDRDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQEY
AGKQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENTIPIDT
QYYLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSKVGGLMAFAQKRSTCIG
CKAVLKTDEAVCDFCKKKESELYQKEIFHLNTLEERFSRLWTQCQRCQGSLHEDVLCTSR
DCPIFYMRKKVQKDLDDQSKLVSRFGW
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaataaaaggaacggcggcccgccttttggtggattatcccaggccaaacgg
ggtaaaatgtccggggagtgggaagacagcccttcccagtttgaagaggaactgttgatg
cttgaagaggcagagatggagttggaggaaatggagagtcaggcaggacatgatgtcatt
ccagtgggtgaccttttttcagccgaccttaaccctcgctggccacggcctcacgccccc
acgctgaacccatcttcagaaactttggtgttccagcagattgatcttgatcactatcta
ggtgcatcggtggcaggaatgcctggccagttgcaagaaaaagtaccaatcattaggatg
tttggcgtgaccgacaatggcaacagtgtgtgctgccatgttcatgggtttgcaccttac
ttctatgttcctgcaccaaatgggttcaaatctgaatttttgggtgagtttaagagagaa
ctgaactctgctgtcctgaaagacatgcgctccaataaagacaacatttcggtcacggtg
ttggctgtggacatcacccgaaaagagaacatgtatggttaccacgggcaacagagtatg
gatttcctgaggatcaccatggcgatgcctcgtctcattgcgcctgcaaagagacttctg
gagcagggctttaaatttggacattttcccatccagggataccaatccttcgaagccaac
atagactttgaaatcaggtttatggtggacagcaatgtggttggatgctgctggattgaa
ctccctaaagacaaatggaggttgagggaagagaggagcacaagcacaggagaagtggac
tctcagactccagtcaaagtgtctctgtgtcagtatgaagtggatgtcgcctggacagat
ttgataagtcacccagcagaaggggaatggcagaggattgcaccacttcgagtcctcagt
tttgacatagaatgtgctggaaggaaagggatctttcctgaaccggataaagatcccgtg
attcagatagcatctatggtgcagcggcagggtgagacggagccgtttattcgcaccgtg
ttcactcttcagtcctgcactagcatcgtcggctcccagatcctgtgcttcactcaggag
aagcagcttcttcagagctgggctgaatttttgcggacggtggacccagatatcataact
ggatacaacatccagaacttcgactttccgtatcttatcaacagggcagcagctctgaag
gtgacttactttccatacttgggccgagtgcgaaacatgaagtcagttctgaaggagtcg
aacttccagagcaaacagatgggccgcagagagaacaagaccatcaacatggaaggccga
gttcagttcgatctgttacaggttctccttagagattacaagttgcgttcctacactcta
aatgctgtgagtttccattttctgcaagaacagaaggaggatgtgcagcactccatcatc
tctgatctgcagaatggaaacgagcaaacgcggcgccgtctggcagtctactgcctgaaa
gacgcgtacctcccgctgcgcctcctgcagaagctgatgtgtgtgatcaactacatggag
atggccagagtgacgggtgtgccgctcagttacctgctctccagagggcagcagatcaaa
gtcgtctctcagctgctgcgacaagccatgaaacagaatctggtcatgcctgtggtgaag
accgaaggaggagaggactacactggagcaactgtcatcgaaccagaaaaaggatactac
agcgtccccatcaccaccctggacttctcctccttgtatccgtccatcatgatggctcat
aacctttgctacaccaccctgctgcagaaaggatccgtagagcgactgcagttgtcatct
gaggatttcatcaagaccccaacaggtgaccaatttgtgaaaagttctgtgaggaaggga
cttcttccggaaatcctggagaacctgctgtctgccagaaagagggccaaagcagagtta
aagaaggaaaccgacccttttaagaagcaggtgctggatggccgacagctggccctaaaa
atcagtgccaactctgtttatggcttcacaggggctcaggtgggcaaactgccctgctta
gaaatctcacagagcgtcaccggatttggaaggcaaatgatcgaacgaactaaacagctc
gtcgagtccaaatacaccatttctaatggttatcaagctgatgccaaggtgatttacgga
gacacagactccgtcatggtcaagctcggagtcgcaacggtcaaggaggccatggaaatc
gggagggaagcggctgagtgggtctcctcccactttacaccccccatcaaactggagttt
gagaaggtttactacccgtacctgctgatcaataagaagcgctacgcaggactctatttc
tcctcaagcgcggacacgcatgacaagatggactgcaaaggcatcgagacggtccgcaga
gacaactgtcctctggtggccaacctaatcaacacctgtctgcagaagatcctgatcgac
agagaccctcaaggtgctgttgatcatgccaaagaagtcatttctgacctgctctgcaat
cgtattgacatcagccagctggtcatcaccaaagagctgacgcgcacggctcaggagtac
gccggcaaacaagcccacgtggagctggcagaaagaatgaggaaaagagacgcaggcagc
gcgccaaacctgggagatcgagtgccgtacgtcatcatcaaagccgcgaaaggcgccgca
gcatacatgaagtcagaggacccgatctacgtgcttgagaacactattcccatcgacaca
cagtactacctggaacagcagctgtccaaaccgctactgagaatatttgagcccatcctc
ggggagagcaaggcagagagcgtcctgctaaagggtgatcacacacgatgcaaaactgtg
ctgacctcaaaggttggaggtctcatggcgtttgcgcagaagagaagcacctgcatcggc
tgcaaggctgtactgaagacggacgaggctgtgtgtgatttctgcaaaaagaaagagtct
gaactgtaccagaaagagatcttccacctgaacacactggaggagcgcttctcccgcctg
tggactcagtgccagcgctgtcagggttccctccatgaggatgtgctctgcaccagccgg
gactgtccaatattctacatgaggaaaaaggtccagaaagatctggacgatcaaagcaag
ctggtgtctcgctttggatggtga
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integrated database retrieval system
