Oryzias latipes (Japanese medaka): 101155411
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Entry
101155411 CDS
T02443
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ola03009
]
101155411 (ddx21)
03036 Chromosome and associated proteins [BR:
ola03036
]
101155411 (ddx21)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101155411 (ddx21)
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
Pre-60S particles
Helicases
101155411 (ddx21)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101155411 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
101155411
NCBI-ProteinID:
XP_004067286
LinkDB
All DBs
Position
3:complement(24037946..24048515)
Genome browser
AA seq
807 aa
AA seq
DB search
MTHFDSAQRVPFHPRVRKLACVHAEGLQLGREMPSKIIFDNQEQSMDEQLDTVADAKASK
KNKIKGEKKLKKKEQQMEEQEEADFEAPAPKKKKKKDKTMVEEQNGHMEEANGICDGVQT
PKQKTKKSKNGNIDTVEEQNGHMEEANGISDDVQTPKQKTKKSKNGNIDKKQKQKANEET
AIKEHSTPNTPSPSSDDSCDSEKETEETPEQKEGAFSNFRISQVTINKLKARGVSYLFDI
QVKTFNPVYDGEDVLAQARTGTGKTFSFAIPLVERLQKEGGETTRGRPPKVLVLTPTREL
AIQVAKDFKDVSKKLAIACFYGGSSYNPQLDAIRNGIDILVGTPGRIKDHLQNHKLNLSD
LKHVVLDEVDQMLDMGFAEQVEEILSLSYKKDSDTNPQTLLFSATCPPWVYEVAKKYMRP
GCKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAN
ELSMNASIKQSSQTLHGDIPQKQREITLKGFRNGAFEVLVATNVAARGLDIPEVDLVVQS
SPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEEQLRYVENKAGITFRRVGVPTANDII
KASSKDAVRFLDSVPVTAIEYFKESAEKLIEERGAVEALAAALAHISGATSLEQRSLLNS
DAGYTTIQMTCSQEMHNLGYAWRTIKEQLGDEFENHIHRMTFLKGKNGVCFDVPSDKVKE
MMSNWQDGRRWQLTVATELPELEEKQLGNRGDRSFGGGNRGERRGFRGGRGGNFRGNGNN
RFRNSGGDFNNSNRGGHKRSFSQAFDY
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgacgcactttgactccgcccagcgcgttcctttccatccgcgtgtccgtaagttagct
tgtgtccacgccgagggtctccaacttggaagagaaatgccgtcaaaaatcatctttgac
aaccaggaacaaagtatggatgaacaactggacactgtggcggatgctaaagcctccaag
aagaacaagatcaagggggaaaagaagctgaagaaaaaagagcagcagatggaggagcag
gaagaggctgactttgaggccccagcaccaaaaaagaaaaagaaaaaagacaagacgatg
gtggaagaacaaaacggccacatggaagaggccaatggtatttgcgatggtgttcaaacg
ccgaagcagaagaccaagaagagcaaaaatggcaacatagacacggtggaagaacaaaac
ggccacatggaagaggccaatggtattagcgatgatgttcaaacgccgaagcagaagacc
aagaagagcaaaaatggcaacatagacaaaaaacaaaagcagaaagcaaatgaagagaca
gcaatcaaagaacattccaccccaaacacgccatccccgtccagtgatgactcctgtgac
agcgaaaaggaaacggaagaaactccagaacagaaagaaggagcgttttccaacttcaga
atctctcaagtcacaatcaataaactgaaagctcggggagtttcttacctttttgatatt
caggtgaagacatttaatcctgtttatgatggggaggatgtacttgctcaggcgcgcaca
ggaacaggaaaaactttctccttcgccatacctttggtggagaggctgcagaaggagggc
ggagagacgacccgaggtagaccccccaaggttctggttttgactcctaccagagagttg
gccatccaggtggcgaaggacttcaaagatgtctccaagaaacttgccatcgcttgtttc
tatggcggcagctcatacaacccacagctcgatgcgattcgtaatggtattgacattttg
gttggaactcctgggcgcatcaaagatcaccttcagaaccataaactcaacctctctgat
ctgaaacatgtggttctggacgaagtggaccaaatgctggacatgggctttgcagaacag
gttgaagaaattctgagtttatcttacaagaaagatagtgacaccaacccacagactctc
ctgttttctgccacttgccccccttgggtttatgaagtggccaagaaatacatgagacca
ggttgcaaacatgtggacttgattggcaaaaagacacaaagagctgcgaccactgttgaa
catctggctatagcctgccactggtcccagcgtgctgcagtgataggcgatgtcatccag
gtgtacagtggcagccatggcagaaccatcatcttctgtgaaacaaagaaggaggcaaat
gagctctcaatgaatgcatccatcaagcagagttcccagaccctccacggggatattcct
cagaaacagagagagataacactgaaaggcttcagaaatggagcttttgaggttctggtt
gctacaaatgttgcagctcgtggattagacattcctgaagtcgacctggttgtccagtct
tctccaccaaaggacgtagagtcatacatccatcgctctgggcgaacaggccgagcaggc
aggaccggagtctgcatctgcttttaccagagaaaagaagaggaacagctgcgctatgtg
gaaaacaaagctgggatcacatttagacgagttggtgtcccaaccgccaacgacatcatc
aaggcgtccagcaaagacgctgtcaggtttctggattctgttccggtcacagctattgaa
tatttcaaagagtctgcagaaaaactgatcgaggagaggggagcggtggaagccttggct
gcagctctggctcacatttcaggagccacaagcctggagcagagatccctcctcaactct
gacgctggttacaccactatacagatgacctgctctcaggagatgcataatctgggttat
gcctggagaaccattaaagagcagctaggagacgagtttgaaaaccacattcacagaatg
accttcctcaaaggcaaaaatggagtttgctttgatgttccatctgataaagtcaaggag
atgatgagcaactggcaagatggtcgccgctggcagctgactgtagccacagagctccca
gagctggaggagaagcagctcggtaaccgtggtgataggagcttcgggggtggtaaccgt
ggtgaaagaagggggttcagaggtggaaggggaggaaattttaggggtaatggcaacaac
aggttccgcaacagtggaggcgactttaacaacagcaaccgaggaggacacaagcgctcc
ttcagccaagccttcgattactga
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