Oryzias latipes (Japanese medaka): 101155503
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Entry
101155503 CDS
T02443
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101155503 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101155503 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ola04515
]
101155503 (pcdh20)
Protein phosphatases and associated proteins [BR:
ola01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101155503 (pcdh20)
Cell adhesion molecules [BR:
ola04515
]
Cadherins
Protocadherins
101155503 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
101155503
NCBI-ProteinID:
XP_004067208
UniProt:
A0A3B3HRA8
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All DBs
Position
3:15614747..15620915
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AA seq
889 aa
AA seq
DB search
MFNGKGSGHSKRGRTWGFCILLLFTTPLSCFANFRQAKELIYKIKEGLPKGTFIGAIGRD
LNLNFTVEPPFSFNLPQKKVSDQYVKLNNSTGELYTSATEIDRETLCPDNSVRWGCDLSL
DVIVLPQQYFQLIKIKILIEDVNDNRPKFPTDEISMFIPENSPVNARYTVEQSAVDPDLG
TYGVQTYWLVNDFGLFTLDVEENEGGELTPFLIVVEELDREVQDEYITDIIAEDGGTPPL
LGAATLKIIITDVNDNCPQFTESQINVTLHGNSTKGVHLARLHAFDPDLGSNALISYTYS
ERVPRTTRTLFHLDKTTGLIKLAGKIDSGTHTFYKLTVLANGPGCIPAVATVTVHVIKVL
TGPPAVISRYIAPEKDGVVTLKESEPAFSPIAFFTVKNMDLNQKVDCHLEGFGPFRIVPY
QLLKNEYLLETTEPLDYEKTQDYELIVVANNTHGVVIKTFLKVQILDENDNAPVFQQALV
EISIEENNLPNSFLTQLQATDQDSGSRGQVIYLLGGDAPGVFVVDQVTGVLTVATSLDRE
EKEKYRFIVRAIDHGTPRRESIATVVVTVLDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADAAENGWVALSILNGSDIFMIDTGRGALRAKTSLDREQQGTYQLWIEAVDGGKP
ALSSVTMVTVLLLDVNDNPPVVLFPQSNQSYMLVLPNTEPGTSITEVYAVDKDTGMNAVI
AYSIIKRKGGEPGSFAIDPETGNITLQRELSIRGLYSLLVKVSDHGQPEPLYSTVMVNFF
VNETVCNESYVQSLLTREADIEVEEKPWYIGQMTDGPERYELFPCRPVLIALSVTCLGLF
SLVVTLLTYMCYKKFKKIRKKGSEVEIPLKTKNDSAKTINRKLRQVSNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacggcaaaggctctggtcatagcaaaagagggagaacatggggattctgcatc
cttctgctgtttaccacccccctcagctgctttgcaaatttcaggcaagcaaaggagctc
atctataaaataaaagagggattacccaaggggactttcataggggctattggacgagat
ttaaatttgaatttcactgttgagccccctttttccttcaatctcccgcagaagaaggtc
agcgatcagtatgtgaaactaaacaattccaccggggaactttacacatctgccacagag
atcgacagggaaaccctctgtccagataactctgtgaggtggggttgtgacctctccctg
gatgtgatcgtcctgcctcagcagtatttccagctcattaaaattaagatcttgattgag
gacgtgaatgacaacaggccaaagttccccactgatgagatctccatgtttatcccagaa
aactctccagtcaatgctcgttacacagtggagcagtctgcggtcgacccagacttgggc
acttatggagtgcagacctactggctggttaacgactttggcttgtttacgctggatgtt
gaggagaacgaagggggtgaactgacaccatttctcattgtggtagaagagctggacaga
gaggttcaggatgagtacatcacagatatcatcgcagaggatggtggaacgcctccctta
ctcggtgcagctactttaaagattattatcacagatgtgaatgataactgccctcaattc
actgagtcacaaattaatgtcaccctccatggaaattctactaaaggggtgcatttggcg
cgtctgcatgcttttgaccccgatctcggttctaatgccctaatcagctacacttacagc
gagcgcgtaccaaggaccactaggaccttgtttcatttagacaaaaccactgggctaatc
aagcttgctgggaaaatagactctggcacacatactttttacaaactcaccgttctggca
aatggacctgggtgtatccctgcagttgcaactgttactgtccatgtcatcaaagtcctt
actggaccccctgctgtaatatctcgttacattgcaccagaaaaggacggagttgtgaca
ctgaaggagtccgagcctgctttttctcccattgcttttttcacagtaaaaaacatggat
ctaaaccaaaaggtggactgccatttggaaggatttggacccttcaggattgttccttat
cagctgctcaagaacgagtatctactggaaactacagagcctctggactatgagaaaaca
caggattacgagctgattgtggttgctaacaacacacatggcgtggtcataaagaccttt
ctgaaggtgcagattttggatgagaatgacaatgcaccagtgtttcagcaggcgctagtg
gaaatatcgattgaggaaaacaatctccccaacagttttttaacccagctccaagccaca
gaccaggacagtggaagtagagggcaagttatatatcttcttggtggggatgctccagga
gtttttgttgtggatcaagtgacaggcgtcctgacagtggctacgtcgcttgatcgtgaa
gaaaaggagaaatatcgttttatagtaagagcaatagatcatggaacaccccgaagggag
tcaattgccacggttgtggtgactgtgttggaccgcaatgacaacagtccacgttttatc
aataaggacttcacattttttgttcctgagaactttccaggatacggtgagattggggtt
ctttctgtgacagatgctgatgctgcagaaaatggctgggtagctttgtccatacttaat
ggcagtgatattttcatgatcgacactggccgaggggctctaagagcaaagacatccctg
gaccgtgagcagcaagggacataccagttgtggattgaggctgtcgacggagggaagcct
gcactctcctctgtcactatggtaactgttctgttgttagatgtgaatgacaatccacca
gttgtcctcttccctcaatccaatcagtcttacatgctcgtgctgcccaacactgaacca
ggcacatcaatcacagaggtgtacgctgtggataaggacaccggcatgaacgcagtgatc
gcctacagcatcattaaaaggaaaggtggtgagccagggtcatttgctattgaccctgaa
actggaaatataactttacagagggagctcagcatcagaggtctttacagccttctggtt
aaggtcagcgatcatggccagcctgaacctctctattctacagtcatggtcaacttcttc
gtaaatgaaactgtgtgcaatgagagttatgttcaaagtttgctgaccagagaggctgac
atagaagtggaagaaaagccttggtatattggccagatgacagacggaccagagaggtat
gagctgttcccgtgtcgacctgtcctcatcgccctctcagtgacttgtttgggcctgttt
tctttggttgtcactctgctgacatacatgtgctacaagaagtttaaaaagatcaggaaa
aaaggaagtgaagtggaaatacctttgaaaactaaaaatgactcagcaaaaactatcaac
agaaagctcaggcaggtctcaaacatctga
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