Oryzias latipes (Japanese medaka): 101155586
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Entry
101155586 CDS
T02443
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101155586 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101155586 (dhx38)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101155586 (dhx38)
Spliceosome [BR:
ola03041
]
Complex C
Other components
Step II factors
101155586 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
Adhesin_E
AAA_16
Flavi_DEAD
PhoH
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
101155586
NCBI-ProteinID:
XP_004067034
UniProt:
H2LUQ9
LinkDB
All DBs
Position
3:20527332..20546090
Genome browser
AA seq
1255 aa
AA seq
DB search
MEEEDVSMHRLEGTSPEAQVGGLIVKKKSTAAEPHVFRAPTPRTSLLGLDLLAAQKRKER
ETKEQEQFNCDERDRKKSKISSYKDWEEGKSDSGSDEEDDEENKSAKKERKYRVTGSETP
SNPGGVSEEFRRRHQQREKDRREHGVYASSKEDKRRDKDRSRDGSRERRSERDEREHSHG
RGSSGSRSERGEHSERSERSQRDVWSERISRGSKRDEPSTPLQRPRDSFTPSHSNWDEDD
SGYNSVRHSQWESPSPFPSPRDSDRSERSHRSGRESERKDRSVRGRYTDDTPLPTPSYKY
NEWANDRKHLGSTPRLSQGKGRKEGAEGGIMFDKESEKEEWEEDQKQADRDWYMMDEGYD
EFHNPFTSTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVD
EDFEEDNATKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVRKH
REQKERKKAQHKHWELAGTKLGDIMGIKKTEEEEPGGKPVGEDGKVDYKADQKFADHMKE
KSEASSDFAKKKSLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHE
DGYTRYGMVGCTQPRRVAAMSVAKRVSEEIGSNLGEEVGYAIRFEDCTSESTMIKYMTDG
ILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRNDLKLIVTSATMDSDK
FAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQE
DIEVTSDQIVERLGELDNAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETS
LTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQ
SAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILG
ALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGRE
EESDQVREKFSVPESDHLTYLNVYNQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDI
MVQQKMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMG
YTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGRSRQENRRRAKDEITN
MEEEMAMAQEQLRTRREEQEKKSNMNIVRAVKICTPGRKEEAPMTPRRTPARFGL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggatgtttccatgcataggctggaagggaccagtccagaagctcaggtt
ggcggtctgattgtaaagaaaaagagtactgctgcagaacctcatgtttttcgagcacct
acaccacgtacatctttgctgggcttggatctactggctgcccaaaagagaaaggagcgg
gagaccaaagaacaggaacaattcaactgcgatgaaagagacagaaagaagtcaaagatt
tcttcctacaaggactgggaagagggtaaaagtgactccggctctgatgaagaggacgac
gaagagaataaaagtgccaagaaagaacggaagtatcgagtgacggggtctgagacaccg
tccaaccctggaggagtcagtgaagagttcagacgcagacaccagcagagggagaaggac
aggcgagagcatggggtctatgcttcttccaaggaggacaagaggagagacaaagacagg
agcagagatggtagcagggagcgacggagtgaaagagatgagagggaacacagccacgga
cgtggtagcagcggcagtcgttcggaacgtggggaacacagcgaaaggagcgagcgctcg
cagagagatgtatggtcggagcgcatcagccgagggagtaaaagagatgaaccctccaca
ccgctgcaacgccccagagattctttcacaccttcccactccaactgggatgaggacgac
agtggttacaacagtgtgaggcattcccagtgggagtctccatctccttttccatctcca
agagattcagatcgctcagaaagaagccatcgctctggacgagaaagtgagaggaaggac
agatcagtcagaggtcgttacacagacgatacacctctcccaacaccgtcttacaagtac
aacgaatgggccaatgacagaaaacatttgggctcaacacctcgtttgtcgcaaggaaaa
ggccgcaaagaaggcgcagaaggaggaattatgtttgataaggagagcgagaaagaagag
tgggaagaggaccaaaagcaagctgaccgagattggtacatgatggatgaaggatatgat
gagttccacaatcccttcacctccacatctgaagaatatgtaaagaaaagagagcagatt
cttcagaaacagactcagaaaagaatatctgcccagaagcgacagatcaatgaggacaat
gaaaggtgggagacgaaccgtatgctgaccagtggtgtggtgcaaaggctggaagtggat
gaggactttgaggaggacaatgcaaccaaagttcatctgcttgttcataacctggttcct
cctttcctggatgggagaatagtcttcactaaacagccagagcctgtcattccggtgaag
gatgctacctctgatatggctatcatctctcgaaaaggcagccaacttgttcgtaaacat
cgggagcagaaggaacgcaagaaggcacaacacaaacattgggagctggcaggcaccaaa
ctgggtgacattatgggcatcaagaagacagaggaggaagagcctggtggcaaaccagta
ggggaagatggaaaagttgattacaaggcagatcagaaatttgcggaccacatgaaagag
aagtctgaggccagcagcgactttgccaagaaaaaaagtcttctggagcaaagacagtat
ctgcccatctttgctgtcaggcagcaactgctcaacattatcagggacaacagcatagtg
attgttgttggggaaacgggcagtgggaagaccacccagctaacacagtacctccatgaa
gatggttatactcgctacggcatggtgggctgcacgcagcctcggagagtggcagccatg
agtgtcgctaagagagtcagcgaagaaataggcagcaaccttggtgaagaggttggctat
gcaatccgctttgaggactgtacctcagagagcacaatgatcaagtatatgacggacgga
attttgctcagggagtctttaagggagtcagatctggatcactacagcgctgttataatg
gacgaagctcacgagcgttccttgaacactgatgttctgtttggactgctacgtgaggtt
gtatcaagacgcaatgacctgaagctcatcgttacctcggctactatggactctgacaaa
tttgctgcctttttcggcaatgtgcccatattccatattccaggaagaacatttccagtt
gacatcttgttcagcaagacccctcaggaggactatgtggaggcggcagtaaagcaggct
cttcaaatccaccttagtgggatggtgggagacatcctcatcttcatgccggggcaggag
gatattgaggtgacatcagatcagattgtggagcgtttgggagaactggataatgctcct
cctctggctgtgcttcccatttactcacagcttccatctgacctccaggccaagatcttc
cagaaggctccagatggtgtgaggaaatgtattgttgctacaaacatcgctgagacctcc
ctcacggtggatgggatcatgtttgtggtggattcaggatattgtaaacttaaggttttc
aatcctcggattggtatggacgctctccaggtttaccccatcagccaggctaacgccaac
cagcgttcaggtcgagccggacgtacaggaccagggcagtgctatagactatacactcag
agtgcctataagaatgagatgctgaccaccaccattcctgagatccagaggaccaacctg
gccaatgtggttttgttgttgaagtccttaggggttcaggacttgctcctatttcatttc
atggatccgccaccagaggacaacatgctaaactccatgtaccagctgtggattttagga
gctcttgacaacacaggcgccctgacaccaacaggacgtctaatggtggaatttcccttg
gaccctgctctctccaagatgctcatcgtgtcctgtgatatggggtgcagtgcggacatc
ctcatcattgtctccatgttgtctgtgcctgccatcttctacagacccaagggtcgtgag
gaggagagtgatcaggtcagagaaaagttctctgttccagagagcgatcatctcacttac
ctgaatgtctacaaccagtggaagaacaacaattactccagcatctggtgcaacgaccat
ttcattcacaccaaagccatgcgcaaggtgcgtgaggtgcgctcccagttaaaggacatc
atggtgcagcagaagatgaacctagtttcttgcggctcagactgggatattattagaaag
tgcatctgtgcggcgtacttccaccaagcagccaagctgaagggtattggagagtatgtt
aatgtgaggactggaatgccatgccatctgcaccctacgagctccctgttcggaatgggc
tacactcctgactacatcatttaccacgaacttgtcatgaccactaaggagtacatgcag
tgtgtgactgcagtggatggagagtggctagcagagcttggaccaatgttctacagcgtc
aagcaagcaggaagaagcagacaagagaaccgccgtcgtgccaaagatgagatcaccaac
atggaggaggaaatggccatggcacaggagcaactccgcacgcgtcgagaggagcaggag
aagaagagcaacatgaacattgtcagggcagttaaaatctgcaccccgggaagaaaagaa
gaggcccccatgacacccagacgcaccccggctcgctttggactttaa
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