Oryzias latipes (Japanese medaka): 101156502
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Entry
101156502 CDS
T02443
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101156502 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101156502 (lsm1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101156502 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
101156502 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
101156502
NCBI-ProteinID:
XP_004072564
UniProt:
A0A3P9K3J4
A0A3B3IPU5
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Position
9:18636985..18639213
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AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDLDKPCDTVLQQVSIEEILEEQRLQQQAKQETEKVKMQALKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgtaccagggacggccagtctcattgacgatattgacaaaaagcacttggtc
ctgctgcgagatggcagaacactaatcggttacctgagaagcatcgatcagtttgccaat
ttagtctttcatcagacggtggagcgtatccacgtgggaaagaaatttggagatattccc
agaggtatcttcatcgtcaggggagaaaatgtagtcctgcttggggaaatagatttggat
aagccctgcgacacagtcttgcagcaggtttcaattgaggagatcctggaggagcagcgg
ttgcagcagcaggccaaacaggaaacggagaaagtcaaaatgcaagctctgaaggacaga
ggcctttccatacccaaagctgataatttggacgagtattga
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