Oryzias latipes (Japanese medaka): 101156701
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Entry
101156701 CDS
T02443
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM7
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101156701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101156701
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101156701
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101156701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-RING_5
zf-RING_10
HSBP1
U-box
zf-Nse
Baculo_IE-1
C5HCH
UPF0184
DUF5082
AAA_13
Motif
Other DBs
NCBI-GeneID:
101156701
NCBI-ProteinID:
XP_023812938
LinkDB
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Position
8:complement(200973..210418)
Genome browser
AA seq
628 aa
AA seq
DB search
MAEAPELFSEQELTCSICLDLFTDPVSTPCGHNFCQACIGGYWASSQVCTCPLCKRQFDE
RPLLSINKVFALIADKYKVAHYSAAGLPPPPPRNSSPVVMTMAEDGRSTNPFLSPPPESQ
KVASVGGDVVWCDVCTGVKRPAVRSCLTCTASYCNEHVQPHLTTPFYSKHPLMDPQEALR
GRTCSMHRRLLEVYCRTCHRCICAICVLEEHRTHKTVSVQTERLNKQKQMARTEQEILNR
IREKESRLGDLRRKLEGLQNYAGRERGDVENLLDQLSAALDRVRTQVVGRMESQLDPLVS
KGESLVNRLEVELRQLNEKRAELEVQASSQDHIRFLQSFEEATAPLGEEQQVGEDEEDEV
FSLHFPLEEVKSGLMEVKEKLDEIQMGDGLPGGHRSFRDSFPAGDLMAADSMMSLRGSTA
SLRKSQWSLKDVKRLKQVSGHKKARVYMEDVTLNPVTAYPFLILSEDRKQVKRGEKLQFF
RNSPHRFDVWSCVIAKEGFSSGRHYWEVFVGENKDWKLGVISESAQRKGLFDMSPSNGYY
ALWWSGNQLRALTAPPLTKVKSHHPKLRQVGVFLDVEEAQVTFYNVKSGSEIYSFHGNAE
LTERMFPLLGTGDKEVPLILMTTQHHLA
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctccagaactgttctcagagcaggagctgacctgctccatctgcctggac
ctgttcaccgacccggtttccactccctgtgggcacaacttctgccaggcctgcatcggc
ggttactgggcgtccagccaggtgtgcacgtgtccgctgtgcaagcgtcagttcgatgag
cgtccgctgctcagcatcaacaaagtcttcgcgctcatcgcggataaatacaaagtggcg
cattacagcgccgccgggctcccgccaccgccccccaggaacagttcgcctgttgtcatg
acgatggcggaggacggcaggagcaccaacccgtttttgtcgccaccaccagaaagccag
aaggtggcgagtgtgggcggcgacgtggtgtggtgtgacgtgtgcacaggcgtgaagcgt
ccggccgtcagatcctgcctcacgtgcaccgcctcctactgcaacgagcacgtgcagcct
cacctcactacgcccttttactccaagcaccccctgatggacccccaggaggccctgagg
ggccgcacctgctccatgcaccgccgcctgctggaggtgtactgcaggacatgtcatcgc
tgcatctgcgccatctgcgttctggaggaacatcggacccacaaaaccgtctcggtccag
acggaacggctcaacaaacagaaacagatggctcggacggagcaggagatcctcaaccgc
atccgggagaaggagagccgcctgggggacctgaggaggaagctggaggggctccagaac
tatgccggccgagagcgcggcgacgtggagaacctgctggaccagctgtccgcggcactg
gaccgggtccggactcaggtggtgggcaggatggagagtcagctggaccctctggtctcc
aagggggagagtctggtcaaccgcctggaggtggaacttcgccagctgaacgaaaagagg
gcggagctggaggtccaggccagcagtcaggaccacatccggttcctgcagagttttgaa
gaagccacagctcctctgggggaggagcagcaagtgggggaggacgaggaggacgaggtg
ttttccctccatttcccactggaggaggtgaagagcggcctgatggaggtgaaggagaaa
ctggatgagatccagatgggcgatggtcttcccggtggtcacagaagcttcagagactcc
tttccagcaggtgacctgatggcggccgacagcatgatgagtctgagaggaagcacagcc
agtctgaggaagagccagtggtcactgaaagatgtgaagaggctcaaacaggtttcagga
cacaagaaggcccgtgtttacatggaggacgtgacgctgaacccggtgacggcgtacccg
ttcctcatcctgtccgaggacaggaagcaggtgaagcgcggcgagaagctgcagttcttc
aggaacagcccccacaggttcgacgtgtggtcctgcgtcatcgccaaggagggcttcagc
tctggccgccactactgggaggtgtttgtgggcgagaacaaggactggaagctgggtgtg
atcagcgagtcggctcagaggaaaggcttgttcgacatgagcccctccaatgggtactac
gccctctggtggagcggaaaccagctccgcgcgctcacggcgccccccctgaccaaagtg
aaaagtcaccaccccaagctgcggcaggtgggcgtgttcctggacgtggaggaggcccag
gtgaccttctacaacgtgaagtctggctcagaaatctacagtttccatggaaacgcggag
ctcacagagaggatgttcccgctgcttggaacgggagacaaagaggttcctctgatcctt
atgaccacacagcaccacctggcctga
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