Oryzias latipes (Japanese medaka): 101156760
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Entry
101156760 CDS
T02443
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101156760 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101156760 (lig3)
Enzymes [BR:
ola01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101156760 (lig3)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101156760 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
101156760
NCBI-ProteinID:
XP_004076853
UniProt:
A0A3B3HEF6
LinkDB
All DBs
Position
14:27671077..27683742
Genome browser
AA seq
1011 aa
AA seq
DB search
MQRLLLTSIQKTVCFGGKPSGSFVRRQQLSTTCRVAFSRSADQLPSSFSAKRFSQQTCLC
HSTPSKPSLPRFSASWLFLRRRFSTRPEMADQRFLVEYAKRGTAGCKKCKDKIQKGIVRI
GKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINK
HVSDLMAKVNASPKKKVQAKMNPTGQLMAPPADPSVNAPRKFSGFTAAKAGSSGAVSLPP
AAAAAGQGSALSTQLCDPKHKDCLFREFRKLCAVVAENNSYNSKTQIIEKFLKKGTGGDQ
FHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQEEMVRDLEQGDVSETVRMFF
EESKSFPPASKSLLTIQEVDESLTRLAQLTKEDEQQSELEAIAKKCTSNDLKCIIRLIKH
DLKMNAGAKHVLDAVDPNAYDAFKASRNLGDVIQRVLRNQQEASNGSGPRKLLTVEASLM
TPVQPMLAEACKSIDQAMKKCPNGMYAEIKYDGERVQVHKSGDSFSYFSRSLKPVLPHKV
AHFKDYIPQAFPGGHSMILDAEVLLIDTKSSKPLPFGTLGIHKKAAFQDANVCLFVFDCI
YFNGVSLMERPLKERRKFLTDNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEGLV
LKDIKSTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDP
DSKKWCTVTKCSGGYDDAMLARLQKELDVIKISKEPSKIPGWLKIVKNYYPDFIIRDPEK
APVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKEHCDF
KVTAGPSTADNNKGSSGGDSTGSSPSPSSNTSAPPKKTANRTPTKAKAQKSEPRTPNSEA
SSAKKMKKSENVNSNGQQSKPRATPQLLEARNDKTLLDIFGGVKLFLPASIQDADRLRRY
FVAYDGDLVADYDAASATHTLAPPGEDSRAQRVSPSWIWECIRKRRVVPPC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacttctcctcacatccatccagaagactgtctgtttcggtggaaaaccttct
ggctcctttgttagacgtcagcagctctctactacgtgcagagtcgccttttcccgttct
gctgaccagcttccctccagtttttctgcaaaaagattttcacagcaaacctgtctgtgt
cactccaccccctccaaacccagcctccctcgtttctccgcttcctggctgttcctgcga
cggcgtttctctactcgaccggaaatggcggatcagaggttcctcgtggagtacgccaaa
cggggcacggcgggctgcaagaagtgcaaggacaaaatccagaagggcatcgtgaggatc
ggcaaaatcgtgccgaacccctttagcgagtctgccggggagatgaaggagtggtatcac
gtgaagtgcatctttgagaagctggagagggcgagggccaccaccaagaagatcgaagac
atcaccgatctggagggctgggaggaactgcaggatgaagacaaggagctcattaacaaa
cacgtctcagacctgatggccaaagtcaacgccagccccaaaaagaaagttcaggccaag
atgaaccctaccggtcagctcatggctcctcccgctgacccatccgtcaacgctccacgc
aagttctcaggcttcacggctgcaaaggccggcagctccggagcggtctcgttgccgcct
gctgccgccgccgccgggcaaggcagtgctctgtccacccagctgtgcgaccccaaacac
aaggactgtctcttccgagagtttcgcaaactctgcgccgtcgtggctgaaaacaacagc
tacaactccaagacgcagattattgagaagtttctgaagaaggggacgggcggagatcaa
ttccacggagatctttacctgacggtgaaactgctgctgccaggcgtcgtgaaaagcgtc
tacaacctcaacgacaagcagattgtgaaactcttcagccgcatattcagatccaaccag
gaggagatggttcgagacctggaacagggtgacgtgtcggagacggtccggatgttcttt
gaagagagtaaatcgtttcctcctgcatccaagagcctgctcaccattcaggaagtggat
gaatctttgacccgcctcgctcagctgacgaaggaggacgagcagcagagcgaactggaa
gccatcgccaaaaaatgcaccagcaacgacctgaaatgcatcatcagactgattaagcac
gacctgaaaatgaacgccggagcgaagcacgtcttggacgccgtagatccgaacgcgtac
gacgccttcaaggcctcccgtaacctgggcgacgtcatccagagggttctgagaaaccag
caagaggcgtccaacgggtcgggaccccggaagctgctgacggttgaggcgtcactcatg
acgcccgtgcagcccatgctggccgaggcgtgcaaatccatcgatcaggccatgaaaaag
tgtccgaacgggatgtacgccgagatcaagtacgacggcgagcgcgtgcaggtccacaag
agcggcgactcgttcagctacttcagccgcagcctcaaacccgtgctgccgcacaaggtg
gcccatttcaaagactacatccctcaggcttttcctggaggacacagtatgattctggat
gctgaggtcctcctaattgacacaaagagcagcaaacctctgccctttgggactttgggg
atacacaagaaagcagcctttcaagacgccaacgtgtgcctttttgtcttcgactgcatc
tacttcaatggcgtgagcctcatggagcggcctctgaaggagcgcaggaaattcctgacg
gacaacatggtggaagttcccaacaggatcctcttctcagagatgaaacacgtcacgaga
gcaggagacctggccgacatgataacgcgggtcatcagggaaggactggaaggcctggtg
ctcaaggacatcaagagcacctacgagccggggaagcgccactggctgaaagtgaagaaa
gactacttgaacgaaggcgccatggcggacacggctgacctggtggtgctcggcgccttt
tatgggaaaggctcaaacgggggcatcatgtccagttttctgatgggctgctacgaccca
gactcaaagaaatggtgcaccgtgaccaagtgctccggaggatacgatgacgccatgctg
gcccggctccagaaggagctggatgtgattaaaatcagcaaggagccgagcaaaatcccc
ggctggctgaaaatcgtcaagaactattatccagatttcattatccgcgaccctgagaaa
gcgccggtctgggagataaccggtgccgagttctccaaatcggaaatgcacaccgccgac
ggcatctccatccgcttcccgcgcatgacgcgtattcgcgacgacaaagactggaagacc
gccaccaacctgcaccagctcagggagctgttccgcatctccaaggagcactgcgacttc
aaagtgacggccggcccgtccaccgccgacaacaacaaagggtcgtcagggggggacagc
acggggagctcgccgtcgccctcttccaacacgagcgctccccccaaaaagacggctaac
agaacaccaacgaaagcaaaggcccagaagtcggaaccccgcactcccaactcggaagct
tccagcgccaaaaagatgaagaaaagcgaaaatgtcaacagcaacgggcagcaaagtaaa
cccagagcgaccccccagctcctggaggccaggaacgacaagacgctgctggacatcttt
ggtggggtgaagctcttcctgcccgcctccatccaggacgccgacagactccggaggtac
ttcgtggcgtacgacggagacctggtggcggattacgacgccgcctccgccacgcacacg
ctggccccacccggagaggacagccgggctcagagggtgtcgcccagctggatctgggaa
tgcatccggaagaggcgcgtggtgcccccctgctga
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