Oryzias latipes (Japanese medaka): 101157036
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Entry
101157036 CDS
T02443
Symbol
tmc5
Name
(RefSeq) transmembrane channel-like protein 5 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ola02000
]
101157036 (tmc5)
03037 Cilium and associated proteins [BR:
ola03037
]
101157036 (tmc5)
Transporters [BR:
ola02000
]
Other transporters
Pores ion channels [TC:
1
]
101157036 (tmc5)
Cilium and associated proteins [BR:
ola03037
]
Other cilia and associated proteins
Stereociliary proteins
101157036 (tmc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
101157036
NCBI-ProteinID:
XP_011477995
LinkDB
All DBs
Position
1:complement(30211463..30225473)
Genome browser
AA seq
1013 aa
AA seq
DB search
MTSYSSRGVFNAAYHDSETLEMDKRSWSNAPHTNPYAREEPVRWGGRLGGGDEAAWGASS
GGLQEESHPMDHIPTGAGAPSFPHHPYHNKFQADNLYNQPPQARLPSLLSDNMTVRLRGL
AMRRMSMFPHASPADVDVTENAIREEMENDEQNLVKELVGMSTLEQTRAIRELTMSFEEK
KNIRNKVMAFRSVKKSHEFTWFAELSENVSLFFRRCSYTMRSARQALELWHGIMKEIGGK
FGTSVLTYFLFLKWLLLFNIFSFVVNFSFITVPLLVYGPNITSNVSFRGLELLTGAGYFT
HTVMYYGAYSNETLRHGVEYNLQLAYFFTIVVYMVLCGIALTFSMASSFKKNFVLVDPAS
TSAWQLLCSWDFSLTGEKTVTQRKNNLRVQLKESLSEKAQQKLLTLREKLKHSGIHLGSW
LVSTALVAGCAASIFFLCQYEEKLFSQWGPGASSFSLQQEAETLLVPFVVSLMNLVIPLF
FSLFNKFEHYSNNRSQIYSQVVRNVLLRMSILGVLCYHWMNEVSQRESFLCWESMVGQAL
YRLVIVDFLFLMLGSFFGEFLRNVIGTKLHRRLGPPEFDVARNVLDLIYAQTLAWIGLYF
SPLLPSIQILKFFILFYLKKVSLTQNCQPPCRTGRAAQMQTIFIFLLFIPFYVGAISIVG
YTAWSLNPSQNCGPFRGLDRSFSVVELWMAGLQTLPGSGWAVWIFENIIKSEIFYFLITL
IILAITYVFYQLIQGRKMLIDLLKQRIVNEGKDKSFLLDKLQNLQKSRPKKDTKHGRSSH
PPSLDGSSGSHSNALHQALLARQQAEQEEARHSDGVSVPADISTSSALMQAMLARQRAER
ESEDFHRRLEDPPTSLSALSLAMEARQRAEGEMVHDNYREESVSTAVSQAMQARLRAEEE
PTVSNAMMQVMQARQQAEQEAGMQWTDVQLQNPAEPGSGAFIQATQARLRAEEEPPASSI
MMQVMQARQQAEQEAGMQWAHVQTQNPAGPGSSPLIQAMLARQQAQNEYDDGY
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgacgagctacagcagcagaggggtcttcaatgccgcctatcacgacagtgagacgctg
gaaatggacaaaaggtcttggagtaacgccccccacacaaacccgtatgccagagaggag
cccgtccggtggggagggaggcttggggggggagatgaggccgcctggggggcatccagt
gggggcttgcaggaggagagccacccaatggaccacatccccacaggagcaggggctcct
tcattcccacatcatccctatcacaacaagtttcaagcagataatctgtacaatcagcct
cctcaagctcgacttccttctttgctatcagacaacatgaccgtgagactgagaggacta
gcaatgagacgaatgagcatgtttcctcacgccagtcctgctgatgtggatgtgactgag
aacgccatcagggaggagatggaaaacgatgaacaaaacctggtgaaggagcttgttggc
atgtccactctagaacaaactcgggccatccgggagctcacaatgagctttgaagagaag
aagaacataaggaataaagtgatggcgttcagatcggtcaagaaatcccatgaattcaca
tggtttgcagaattatccgaaaatgtatccctgtttttcagaaggtgcagttacactatg
cgatcggccaggcaggcgctggaactgtggcacggcatcatgaaggagattggaggaaag
tttggcaccagcgttctcacctactttttgtttctcaagtggcttctcctgttcaacatt
ttctccttcgtggtcaacttcagcttcatcaccgtccctctgctcgtttatggccccaac
atcacttccaacgtgagcttcagaggactggagttactgactggagctggttacttcact
cacactgtcatgtactatggtgcctacagcaacgaaaccctaaggcatggggtggagtac
aacctacagctggcttacttcttcaccattgttgtgtacatggtgctgtgtggcatcgcc
ctgacattcagtatggcgagttcattcaagaagaactttgttctggtagacccagcctcc
accagtgcatggcagcttctgtgcagctgggattttagtctaaccggtgagaaaacggtg
actcagcggaagaacaacctccgagtccaactcaaggagtctctgtcagaaaaagcccag
cagaagctgctgacacttcgtgaaaagctaaagcactccgggattcatttgggctcctgg
ctcgtttccaccgcactggttgctggttgtgctgccagcatcttctttctctgccagtac
gaagaaaagttattttctcagtgggggccaggcgcttccagcttttcactgcagcaggag
gcggagactctgctcgtcccctttgtggtgtctctaatgaacctggtgatcccgctcttc
ttctccctcttcaataagtttgaacactactcaaacaaccgcagtcagatttacagccaa
gtggtcaggaacgtcttgctcaggatgtccattctgggagttctgtgctaccactggatg
aatgaagtgtctcagagagaatcctttctgtgctgggagtccatggtgggccaagctctc
taccgtctggtcattgttgattttttattcctgatgctgggatctttcttcggggagttt
ctcaggaatgtgatcggaaccaagctgcatcggcgtcttgggccgccagagtttgatgtt
gccaggaatgtcctggatctcatctatgcacagacactggcctggattggactctacttt
tctcctcttctaccgagcatccagattctcaagttcttcatcttgttttatttgaagaag
gtcagcctgacccaaaactgccagcctccgtgtcgaaccggcagggcagcacagatgcaa
accatcttcatcttcctcctcttcatccccttttatgtgggagccatatcgatagttgga
tacaccgcctggagtctgaacccctcccagaactgcggccctttccggggcctagataga
tccttcagtgtggttgaactctggatggccggtctgcagaccctcccaggttctggctgg
gccgtgtggatcttcgaaaacatcatcaaaagtgaaatcttctactttctcatcactctc
atcatcctggcgatcacatacgtcttctatcaacttattcaaggccgcaagatgctgatt
gacctcctgaagcagaggattgtcaatgaaggaaaagataagtccttcttgttagacaaa
ctccagaacctgcagaagtctcggccaaagaaagacacaaagcatggcaggagctcacat
ccaccttccttggatggctcctctggaagtcattccaacgccttgcatcaggctcttcta
gctcgtcagcaggctgagcaagaggaggctagacacagcgatggagtgtctgttcccgcc
gacatttccacctccagcgcgctgatgcaagccatgctggcccgccagagggctgaaaga
gaaagcgaggacttccatcggaggctggaggacccccctacatccctcagtgcgctctca
ctagctatggaagcccggcagagagcagaaggtgaaatggtgcatgataactacagggag
gaaagtgtctctaccgctgtatcgcaggccatgcaggcaagactgagagcagaggaggag
ccgacagtgtcgaacgccatgatgcaggtcatgcaggcgaggcagcaggcagagcaggag
gccgggatgcagtggactgatgttcagcttcagaatccggctgagccaggctcaggcgcc
ttcattcaggccacacaggcaagactgagagcagaggaggaaccgcctgcgtcgagcatc
atgatgcaggtcatgcaggcgaggcagcaggcagagcaggaggctgggatgcagtgggcc
catgttcaaacacagaacccagctgggcctggctccagccccctaattcaggccatgctg
gcccgacaacaagcccagaacgagtatgatgatggttactga
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