Oryzias latipes (Japanese medaka): 101157086
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Entry
101157086 CDS
T02443
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101157086 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101157086 (smarcc1)
03036 Chromosome and associated proteins [BR:
ola03036
]
101157086 (smarcc1)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101157086 (smarcc1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101157086 (smarcc1)
PBAF complex
101157086 (smarcc1)
GBAF(ncBAF) complex
101157086 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
101157086
NCBI-ProteinID:
XP_004078529
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All DBs
Position
16:complement(27728062..27747777)
Genome browser
AA seq
1123 aa
AA seq
DB search
MAMAATTAGTGSGGPASGPVGSGTAVGRKKDGGPSTKFWESSETVSQLESVRLWIGKHYK
KYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFMDFKAGGALCHILGS
VYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPIVFLSPDVEPKQASKL
KDIIKRHQGSITEDKSKATHHIYPSPGQQEEEEWLRPVIRKDKQVLVHWGLYPDSYDTWV
SAGEVDADVEDPPNGDKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVNSRQRIYPKE
EESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGSHWKRRGHRGEEEDM
EEDMTKDLDESSAGASMEEGSMSKNDDMEDDSVMSGGKDDEEQNKGEVNRMTDANEDNVT
EQTHHIIIPSYGAWFDYNSIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSESRPLPMGPPPTPHFTVLADTP
SGLMPLNHRPPTIPPQQPMPNFADKSKDKPIDLQNFGLRADLYSKKNTKSKAGIATRDWT
EQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENTEASLGPLAYQ
PIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPAELVEAHVKKVQEA
ARSTGKVDPTFGLESSGIAGTAPEEPEKTETTEPEKMEADTESQQADKAEMKDEAEKPSE
SAEKSEKTETTDKVKKEGAEPLERDEEKEEEGEAKASPVAEKDKEEAMETSSSEQEKEKE
EKETTEEGEEKRKKLEHDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVALLVET
QMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQMEQQA
AAAAAAAAQAQGQGQPPGPGHHHGPQGPGPHSGPPPPGMHPGGPPPHHGAPPPHHGAPPP
HLGGPPAAAAMHPGYPPMAHHPMAPHHPGPTGPMGPGQPMPGRMMSGPPSAGPPPGGMPP
MMPPRHPGAPNGMYPGPPPAQPEAIPPAPVGPPAPQSGRVADN
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcggcgacaacggcaggaacaggctcgggcggaccagcatctggccctgtc
ggcagcggaacagcagtaggaagaaagaaagatggtggtccatcaacgaaattttgggag
agctcagaaactgtgtcccagctggaatcggttcgactctggattggaaagcactacaag
aagtatgtccagaacgattccccatccagtaaatcgttggccggtttggtggtccaattg
ctgcagtttcaggaggatgcgtttggacgcagggtcaacaatcctgctcttactaagttg
cctgcaaaatgttttatggattttaaggcaggaggggctctctgtcacatcctgggatca
gtctataagtttaagagcgagcagggatggcgccgttttgatctgcagaatccgtctcga
atggacaggaatgtggaaatgttccttaatgtagagaagaacctcgtacagaataactgt
ttgactcggcccatcgtctttttgtcacctgacgttgaacccaaacaagccagtaagctc
aaagacatcatcaaaagacaccagggctccatcactgaggacaagtctaaggctactcac
cacatttacccttctccgggtcaacaagaagaagaggagtggctacgcccagtcattagg
aaagacaaacaggttcttgttcattggggtctttatccagacagctatgacacgtgggtt
tcagccggtgaggtggatgctgatgtggaagacccaccaaatggtgacaaaccctggaag
gttcacgccaagtgggttttagacacagatgcctttaatgagtggatgaacgaggaagac
tacgaggtggacgagaacaaaaagcctgtcaactcccggcagaggatctaccccaaagag
gaagagtcttcccgtacacccgatcgcaaggagcgcaaggccaactccgctggcaagaag
aggaggcgctcgccttcacctcccagcactcccgcagagtcccgcaagaagggaggaaag
aaggggaatccaggctctcactggaagcgacggggccacagaggagaagaggaggacatg
gaggaggacatgacaaaggacttggacgagtcctcagccggtgccagcatggaggagggc
agtatgtctaagaatgatgacatggaggatgactctgtaatgtctggtggaaaggatgat
gaggaacaaaacaaaggagaagtgaaccgaatgacagatgccaacgaggataatgtgacc
gaacagactcatcacatcatcattccgagctacggagcttggtttgattacaacagcatc
cacgagattgaacgaagagccctgcctgagttttttaacgggaaaaacaaatccaaaact
ccagaaatatatttggcgtaccggaacttcatgattgacacgtatcggctgaacccccag
gagtacctcacctccacttcctgccgcaggaacctgacaggagatgtctgcgccatcatg
agggttcatgccttcctggagcagtggggtttagtcaactaccaggtggactctgaaagc
cgcccgctccccatgggccccccacccacacctcacttcactgtcctggctgacaccccg
tccggcctcatgccgcttaaccacagaccgccaacgattcctcctcagcagccgatgcct
aattttgcagataaaagcaaagataaacccatcgacctgcagaactttggccttcgtgct
gacctctacagcaagaaaaacactaagtctaaagcaggcatcgccaccagagactggact
gagcaggagactcttcttctcttggaggccctggagatgttcaaagacgactggaacaaa
gtatctgagcatgtcggttcacgcacccaagacgagtgtatcctccactttctgcggctg
cctatcgaagatccctacctggagaacacagaggcgtctctgggtccgctggcttatcag
cccatacccttcagccagtctggaaaccctgtgatgagcaccgtggcgttcctggcctct
gtggttgatcccagagtggcctctgctgcagccaaggcagctttagaggagttttctcgc
gttcgtgaagaggttccagcagagttggtggaagctcatgtgaagaaggtgcaggaggcg
gcgaggagtacaggaaaggttgaccccacctttggcctggagagcagcgggatcgctgga
actgctcccgaggagccagaaaagactgaaactacagagccagaaaagatggaggcagac
acagaatcccaacaggccgataaggctgagatgaaggatgaggcagagaaaccgagcgag
tctgcagagaagagcgaaaaaaccgaaacaacagataaggtgaagaaagaaggagcggag
ccattggaacgcgatgaggagaaggaagaggagggagaagcaaaggcgtctccagtcgca
gagaaagataaggaggaggcaatggagacgtcgtcttccgagcaggagaaagaaaaggag
gagaaggaaaccacagaggagggagaagagaagaggaagaagctggaacatgacattggc
gagggaaacattgctacagctgctgctgctgcgcttgcttctgctgccaccaaggccaag
cacctggcagcagtcgaggaaaggaagatcaagtctctggtggctctgctggtggagacc
cagatgaagaaactggagatcaagctgaggcactttgaggagctggagaccatcatggac
cgcgagaaagaggccttggagcttcagcggcagcagctcctcacagagcgacaggcgttc
cacatggagcagctcaagtacgcagagatgaaggcacgccagcagatggagcagcaagct
gccgctgcagccgccgccgctgctcaggcccaagggcagggacaaccccccggtcccgga
catcaccacgggccccagggtcctggaccccattctggaccccctccaccaggcatgcac
cctggagggcctccaccccaccacggagcgcctccacctcaccacggagcacctccaccc
catcttggaggtcctcctgctgctgcagcaatgcaccctggttacccgcccatggctcac
caccccatggccccccaccaccctggaccgacgggaccgatgggaccaggtcagccaatg
cctgggcgtatgatgtccgggccaccgtctgccggaccccctcctgggggaatgcctccc
atgatgcctccccgtcacccgggagctcccaacggcatgtatcccggcccccctccagcg
cagcccgaggccatccctccagcccccgtgggacccccggcccctcagagtggacgagtg
gctgacaactga
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