Oryzias latipes (Japanese medaka): 101157188
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Entry
101157188 CDS
T02443
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101157188 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101157188 (parn)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101157188 (parn)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101157188 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
101157188
NCBI-ProteinID:
XP_023814352
LinkDB
All DBs
Position
1:23266066..23276744
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AA seq
669 aa
AA seq
DB search
MEVTRTNFKECLSHVYSAIDEADFLAIDGEFSGISDGPSVSALTNGLDTPEERYVKLKKH
SMDFLLFQFGLCTFKYDQEKSKYVTKPFNFYVFPKPFSRTSPDLKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEQEVQLREQTEERRNQHANGLGTPSFISPSSKAPAHVPDEQKDY
INRVVEKVENLFSSNKETLDLEPCSGFQRKLIYQTLSWKFPKGLHVETIETEKKERFIQV
SKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CSLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELINNTSLAELEKQVKESPFKAPAVE
TAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANHLGSFLTPPKAHISAHSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDETSA
FVCLSQTDQVQIAMNTSRYAESYRIQTYAEYIHEKRQKEEKLGQTTKSWGEDGWMKPQYP
SSTAGFGYHRMRKRSISPALGEQGTEDAPAADGWSHYSDNTDRKKMKLDDGKSSVEAAES
KTSEEWLNTTNKSYSPSLSPSPDGSDPDSQAEGTKQPSTASGRKSQKNKKKKPEAPESSS
SLFEVPEVW
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacacggacgaattttaaagaatgtttgagccatgtgtacagcgctatagac
gaagcggatttccttgctatcgatggagaattttcagggataagtgatggtccaagtgtc
agcgctttaacaaacggactggatacgccagaggagcgatacgtcaagctgaaaaagcat
tccatggactttctcttgttccagtttggattgtgtaccttcaagtatgaccaggaaaag
tcaaagtatgtcacaaagccatttaatttctatgtatttccaaaacccttcagtaggacg
tccccagatttaaagttcatctgtcagagttccagtattgacttcttggccagtcaggga
ttcgacttcaacaaggtcttctgtcacggaatcccgtacttaaatcaggaacaggaagtg
cagctgagagagcagacagaggagagaaggaatcaacatgctaacggtctcgggacgcca
tccttcatctctccatcctccaaagcccctgcacatgtgcctgatgagcaaaaagactac
atcaacagagttgtagaaaaggtcgaaaaccttttcagtagcaacaaagaaactttggat
ttggaaccatgttctggcttccaaagaaagttgatataccagactcttagttggaagttt
cccaaaggtcttcatgtggaaaccatagaaaccgaaaagaaagaacgattcatccaagtc
agtaaagttgacgaagaggagaggaagaggcgggaacaacagaaactggagagagaacag
gaggaactgaacgatgctgtcggcttttcgagagtcatccacgccatttctaaatctggt
aaacttgttgtcggccataacatgctcttggatgtgatgcacacgatccaccagttctac
tgctctctgccagaggaccttcaagactttaaagaggttacaatgtgtgtctttccgaga
ctgctggacactaagttgatggcctcaactcaaccatttaaggagctgatcaataacacg
tctctggcagagttggagaaacaagtgaaagaaagccccttcaaggcgccagctgttgag
acggcagagggcttccccagctatgacaccgctcaggagcagctccacgaggccggatac
gacgccttcatcacaggcctgtgcttcatctccatggccaaccatctagggtctttcttg
actccaccaaaagctcacatctccgctcactccaaactaattgaaccgttcttcaataag
ctcttcctcatgaggattatagatataccctacctcaacatcaccggaccggacctgcaa
cccaagagggaccatgttctttatgtgaccttcccaaaggaatggaagacgagtgatctg
taccagctcttcagtgcctttgggaacattcaggtgtcctggatagatgagacatctgct
tttgtgtgtttaagtcaaaccgatcaggtacaaatagcaatgaacacaagccgctacgca
gagagctacaggattcagacatatgccgagtacatccatgagaagcggcagaaggaggag
aagctgggacaaaccaccaaatcatggggtgaggacggctggatgaaaccccagtacccc
tcctccacagcagggtttgggtaccacaggatgaggaagcgcagcatcagcccggctctg
ggagagcagggaaccgaggacgctccagccgcagatggatggagtcactactcggataac
acagaccgcaagaagatgaagctcgacgatggaaagtccagtgttgaggctgctgagagc
aagacctcagaggaatggttaaacacaacaaataaatcatattctcccagcttaagtccg
agtcctgatggttcagatccagatagtcaggctgagggaacaaaacagccttcaacggcc
tctgggaggaaaagtcaaaagaacaaaaagaagaagcctgaagcacctgaatcttcaagc
tctttgtttgaggttccagaagtttggtag
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