Oryzias latipes (Japanese medaka): 101157282
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Entry
101157282 CDS
T02443
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
101157282
03036 Chromosome and associated proteins [BR:
ola03036
]
101157282
Transcription factors [BR:
ola03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101157282
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101157282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
Zf-C2H2_ZNF451
zf-met
zf-C2HE
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_15
zf-WIZ
RXT2_N
Motif
Other DBs
NCBI-GeneID:
101157282
NCBI-ProteinID:
XP_004067381
UniProt:
H2LY05
LinkDB
All DBs
Position
3:complement(21681855..21688629)
Genome browser
AA seq
753 aa
AA seq
DB search
METGQATALASDGKVLSEGGEALIQTGQGDEAGTMEMMVMDALDPALLQMKTEVLEGGGT
VTVTGGDEGQIITLQVVNMEEQAGAALGLGQLQLVQVPVTTTTVEGLQATYVEASAANKD
AVICHTLPLPEGFQVVKVGANGEVETVEQDELQAAQEDLQGQEGEEVEEDEEAAEIVTSV
PQDDPEWTKDPDYQPITAVRKGKKGKKSRLRYAEGDRDMDVSVYDFEEEQQEGLLSEVNA
EKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRA
FRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYSSVE
VSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTM
KMHILQKHTENVAKYHCPHCDTVIARKSDLGVHLRKQHSFIETGKKCRYCDAVFHERYAL
IQHQKTHKNEKRFKCDQCDYCCRQERHMIMHKRTHTGEKPFACEQCEKTFRQKQLLDMHF
KRYHDPTFVPTAFVCTKCSKTFTRRNTMLRHAEGCTGEASGDENGTPTPKKGRRGRKRKM
QARRDDYDDDDEDDEDDDDNTEGELDEIEEEDDLLTEIEVEQAAPVIPIPAPIEPPVKRK
RGRPPKNKPEVAAIIHVEDEVQEVEELVKKEVGAEQVNCTDETTEQVITGGGKPGAQSEE
LSQADAAAQEVQLSAAPSNGDLTPEMILSMMDR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagactggccaagcgactgctctggcctccgatggaaaagtcctgtcggagggcgga
gaggccctgattcaaactggccagggggatgaggccggtactatggaaatgatggtgatg
gatgctctggatccagctttgctgcaaatgaaaacagaggtccttgaagggggcggcact
gtcaccgttactggtggagatgaggggcagatcatcactctccaggtggtgaacatggag
gagcaagcaggagctgcattaggcctaggtcaattacagctagtgcaggttccagtcaca
acaactactgtagaggggcttcaggcgacttatgttgaggcatctgctgccaacaaagat
gcagttatttgtcacacacttcctttacctgaggggtttcaggttgtaaaagtgggtgcc
aacggtgaggtagagactgtggagcaagatgagctccaggctgctcaagaggatctccaa
gggcaagagggtgaggaagtagaggaagatgaagaagcagcagaaattgtaacatcggtg
cctcaagatgacccagagtggacaaaagacccagactaccaacccatcacagccgtccgt
aaaggaaagaagggaaagaagagccgcctgcgttacgcagagggcgaccgggacatggat
gtttctgtgtatgactttgaagaggagcagcaggagggcctgctgtcagaggtgaacgca
gagaaagttgtgggcaacatgaagcccccgaagcccacaaaaatcaagaaaaaaggtgtg
aagaagacttttcaatgcgagctttgcagctacacatgtccaaggcgctctaacctggat
cggcacatgaagagccacacggatgagagaccacacaaatgtcacctctgtggaagagcc
ttcaggacagtcaccctgttgagaaaccacctcaacacacacacaggcactcgtcctcat
aaatgtacagactgtgacatggcgtttgtgaccagcggcgagttggtgcgtcatcgccgc
tacaagcacacgcacgagaagcctttcaaatgttcaatgtgcgactactctagtgtggaa
gtgagcaagttgaaaagacacatccgctctcacacaggggaacgtcccttccagtgcagc
ctgtgcagctacgccagcagagacacctataagctgaagcggcatatgagaacacattcg
ggcgagaagccgtatgagtgctacatctgccacgctcgtttcacacagagcggcaccatg
aagatgcacattctgcagaaacacacagagaacgtggcaaagtaccactgcccacactgc
gatactgtcatcgcacgcaaaagtgaccttggtgtccacttgcgaaagcagcactcgttt
attgagaccgggaagaaatgccgttactgcgatgctgtgtttcatgagcgctatgctctc
attcagcaccagaagacgcacaaaaacgagaagcgttttaagtgtgaccaatgtgactac
tgctgccggcaggagcgtcatatgatcatgcacaagcgtacgcacactggtgagaagccg
tttgcctgcgagcagtgtgagaaaaccttcaggcagaaacagcttttggacatgcacttc
aagcgctaccatgaccccacctttgtccccactgcttttgtctgcaccaaatgcagcaag
acgttcacccgcaggaacaccatgctgcgtcatgctgagggctgcacgggcgaggcttca
ggagatgaaaatggaactcccacacccaaaaagggccgtcgtggcaggaagaggaaaatg
caggccagaagagatgattatgacgacgatgatgaggatgatgaggatgatgatgacaac
acagagggtgaactggatgaaatagaggaggaagatgaccttctaactgagattgaagtg
gaacaggctgctcctgtcatccccatcccagctccaattgagcccccagtcaagaggaaa
cgtggacgacctccaaagaataagcctgaagtagctgccattattcatgtggaagatgaa
gttcaagaggtggaagaacttgtgaaaaaagaggttggcgccgagcaggtcaactgtaca
gacgagaccactgagcaagtgatcaccggcggagggaaacccggcgcccagtccgaggag
ctgtcccaggcggatgcagcagcacaggaggtgcagctgtctgcagcaccctccaatgga
gacctgacccctgaaatgatcctcagtatgatggaccgatga
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