Oryzias latipes (Japanese medaka): 101157453
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Entry
101157453 CDS
T02443
Symbol
ddx23
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101157453 (ddx23)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101157453 (ddx23)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101157453 (ddx23)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101157453 (ddx23)
Complex C
U5 SnRNP specific factors
101157453 (ddx23)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
101157453
NCBI-ProteinID:
XP_004070857
UniProt:
A0A3B3HS72
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Position
7:19107139..19113820
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AA seq
802 aa
AA seq
DB search
MAADSTDKKDAESSASKDRERKRSRSRDRDRKASPLRKRHRSRERNRSKSAERDRRMKDR
DKDRDRDKDRDRGRKDRERDSHRRDRNKRSPSPKSKDGRMKKEKEIKTEEEEEENKKKEK
VQPLSLEELLAKKKAEEEAESKPKFLSRAEREAEAIKRREQQVEEKKKLMEDERKKRRVF
QDMGRKMLEDPQERERRERRERMDRENNGNEEDDERLKMREEKDKTKELHAIKERYLGGI
KKRRRTRHLNDRKFVFEWDASEDTSVDYNPIYKEKHQVQLYGRGFIAGIDLKQQKRDQSR
FYGDLMEKRRTLEEKEQEETRLKKVRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYS
ITTKGGKIPNPIRNWKEYALPAHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG
SGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIR
TVAVIGGISREDQGFKLRMGCEIVIATPGRLIDVLENRYLVLGRCTYVVLDEADRMIDMG
FEPDVQKILEYIPVTNQKPDTDEAEDPEKMTMNFESGKHKYRQTVMFTATMPPAVERLAR
SYLRRAAVVYIGSAGKPHERVEQKVMLMSEGEKRKKMLEVLASGFEPPIIIFVNQKKGCD
VLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVIN
YDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSAVFYDLKQAILESPVSNCPPELANH
PDAQHKPGTILTKKRREETIFA
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgactccacagataagaaagatgctgaatcctcagcgagcaaggacagggag
aggaaacgcagccgctcccgggaccgagatcgcaaagcgtctccactgcgcaaacgtcat
cgctctcgcgaacggaaccgctccaaatccgcagaaagagaccgacgcatgaaggacaga
gacaaggaccgcgacagggataaagacagggacaggggccgcaaggacagagagagggac
agccatcgccgggatcgcaataaaagaagtccgtctccaaagtcaaaggatggcaggatg
aagaaggaaaaagagatcaaaacagaggaggaagaagaggaaaataaaaagaaagaaaag
gtccaaccgctttcgttggaggagcttttggccaagaagaaggcagaagaagaagcagaa
tccaagcccaagtttctgtcaagagcagagagagaagccgaggctataaagcgcagggag
cagcaggtggaggagaagaagaaattgatggaagacgagaggaagaagaggagggtgttt
caggatatgggtagaaaaatgttggaggacccacaggagcgggagagacgtgagaggagg
gaacgaatggaccgagagaataatggaaatgaagaggacgatgagcgcctaaagatgcgg
gaggagaaagataaaactaaagaactccatgccatcaaggaacgttacctgggcggcatc
aaaaaacggcggagaactcgccacctcaatgacaggaagtttgtgtttgagtgggacgct
tcagaagacacatccgtggactacaatcccatatataaagagaagcatcaggtgcagctg
tatgggcgtggcttcatagccggcatcgacttgaagcagcagaaacgagaccagtctcgt
ttctatggcgacctgatggaaaagagaagaactctggaggagaaggagcaggaagagaca
aggttgaagaaggtgcgcaagaaggaggccaagcagcgctgggatgacaggcactggtct
cagaagaagctggacgagatgacggacagagactggcgtatcttcagagaggattacagc
atcaccaccaagggaggaaagatccccaaccccatcaggaactggaaggagtatgcgctg
cccgcacacatcctggaggtcatcgacaaatgcggctacaaggaaccaactccaattcag
aggcaggccattcctattggcttacaaaaccgtgacatcatcggtgtggctgagaccggt
agcggtaaaacggctgccttcctcattccactgctggtctggatcaccactctgcccaaa
attgacaggatcgaagactccgatcaaggtccttacgctgtgatcttggctccaactcgt
gagctggcccagcagattgaagaggagaccatcaagtttggaaaacctctcggtattcgg
acggtggcggtgattggaggaatctctcgagaggaccaaggattcaaactccggatgggc
tgtgagattgtgattgccactcccggccgtctgatcgatgttttggagaaccgctacctg
gtcctgggccgctgcacctacgtggttctggatgaggcagatcgcatgattgacatgggc
tttgagcccgatgtccaaaagattctggagtacatcccagtgaccaatcagaaaccagac
actgacgaagcagaagaccctgagaaaatgaccatgaactttgaatctgggaagcataaa
tacagacagaccgtcatgttcactgctaccatgcctcctgctgtggagaggctggccagg
agctacctgaggcgggctgctgtggtgtacatcggttctgctggaaaacctcacgagagg
gtggagcagaaggtcatgctgatgtcagagggagagaagaggaagaagatgctggaggtt
ttggccagtggcttcgagcctcccatcatcatcttcgtcaaccagaagaagggttgcgat
gtgttggccaagtccctggagaagatggggtacaatgcttgcacgctgcacggtggcaaa
ggtcaggagcagagagagtttgcgctctccaaccttaaggctggagccaaagatatcttg
gtggccacagatgttgctggtcgtggtatcgacattcacgacgtgtccatggtcatcaac
tacgacatggcgaagaacattgaagattacatccatcgtattggtcgtaccggtcgtgct
ggtaagagcggcgtggccatgactttcctcaccaaagaggactctgctgtcttctatgac
ttgaagcaggccatcctggagagtcccgtctccaactgcccgccggagctggccaaccac
ccagacgctcagcacaaacctggaaccatcctgaccaagaaaaggcgcgaggagaccatc
tttgcttga
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