Oryzias latipes (Japanese medaka): 101157535
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Entry
101157535 CDS
T02443
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
101157535
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ola04040
]
101157535
Ion channels [BR:
ola04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
101157535
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
101157535
NCBI-ProteinID:
XP_023811821
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All DBs
Position
6:28101970..28110340
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AA seq
679 aa
AA seq
DB search
MVSERLQELVKMFKERTEKAKEKLIDPDSSDEDSIITSPPQPDPGAQTVDREEVDKQGGP
SGGERGGEMDGDDKEEEEEESGRCSKLRTPRWIRACMNVCLPASIDPFTNFMYVLWMLLV
SLAWNWNVWFIPVRWAFPYQTPDNILYWLLIDYVCDLIYILDITVFQPRLQFVREGDIVS
DKKEMRKNYMKTVRFKFDIASLVPLEFFYFKTGINPLLRLPRLLKIYSFLEFNERLEAIL
TKAYIYRVIRTTTYLLYCLHFNACLYHWTSAFIGLGSTQWVYNGDGNGYIRCYYFAVKTL
INIGGVPDPTSLSETVFQLINYFIGVFVFSIMIGQMRDVVGAATAAQTYYRTCVDNTIKY
MSSYRIPRDVQNRVKMWYNYTWQSQGMLDEQELLTQLPEKMRLDIAIDVNYSIVSKVPLF
QGCDRQMIFDMLKSLHSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGRTVFATLR
AGSVFGEISLLAVGGVNRRTANVIAHGYANLFILDKKDLNEILVHYPESKKLLRKKARKM
LNKGKKPETKVEAKEAPQVPAAPLRPETPKLLRAALEMAERSSRLKGAMFKVKEKTTKSS
LSLQPSRSSSLAPPSPTVGSGPERDADTPTSVSASSSPTRSTCREPTAPPPAAQLHVNAT
EKEDASEDGVEKADQENNS
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcgagcgacttcaagagcttgtgaagatgttcaaagagaggacagagaaggcc
aaagagaaactcatcgaccccgacagctcggatgaagacagcatcatcacctctcctcct
cagccggaccctggagctcaaacagtagacagagaggaagtggataagcaaggaggacct
tcaggaggagaaagaggaggggaaatggatggcgatgataaggaggaggaggaggaagag
tccggccgatgcagcaaactgagaacacctcggtggatacgagcttgtatgaacgtctgc
ctccccgccagcatcgaccccttcaccaattttatgtacgtcttgtggatgcttttggtg
tctttggcttggaactggaacgtgtggttcatcccggtgcgctgggccttcccctaccaa
acccccgacaatatcctctactggctgctgatcgactacgtctgtgacctcatttacatc
ctggacatcacagtctttcagcctcgactgcagtttgtgcgtgaaggagacatagtgagc
gacaaaaaggagatgagaaagaactacatgaaaaccgtccgcttcaagtttgacattgcg
agtcttgttcccctggagtttttttacttcaaaactggcatcaaccctctgctgcgttta
cccagactgctgaagatctactcttttttggagtttaacgagcgtttggaggccatcctg
accaaagcctacatttacagggtgatccgaaccaccacttatctgctgtactgcctccac
tttaatgcgtgtctctatcactggacgtctgccttcattggactggggtccacccagtgg
gtgtataatggggatggaaacggatacattcgctgttactactttgctgtgaaaactctg
atcaacatcggaggtgtgccggatcccacctccctgtctgagacggtcttccagctcatc
aactatttcattggagtctttgtcttttctatcatgattggtcagatgcgggatgtggtc
ggcgcggcaacagcagcccaaacctactaccgcacatgtgtggacaacaccatcaaatac
atgtcgtcctaccgaatccccagagatgtccagaaccgggtcaagatgtggtacaactac
acctggcagtcacaaggcatgctggacgaacaggaactgctgactcagcttccagaaaaa
atgcgtctggacatcgccatagatgtgaattactccattgtgagcaaagtccctctgttt
cagggttgtgacagacagatgatttttgacatgctgaagagccttcattctgtcgtctac
ctgccaggagattatgtctgcaaaaagggggaagtaggtcgggagatgtacatcattaaa
gcaggggaggtgcaggtggttggaggtcctgatgggaggacggtgttcgccacgctcaga
gcaggatcagtctttggagaaataagtctgctagctgtgggcggtgtgaacaggcgcaca
gccaatgtgatcgctcacggttatgcaaatctctttatcctggataaaaaagacctgaac
gagattttggtgcactaccctgagtccaagaaactgctgcgcaagaaagcaagaaagatg
ctgaataagggaaagaaacctgaaaccaaagtagaagctaaggaagcccctcaggtgcct
gcggcgcctctcagaccagaaactcccaaactcctcagagcagcgcttgagatggcagag
agatcctccaggcttaaaggtgccatgtttaaagtaaaagagaagacaactaagtccagt
ctttcattgcagccatctcgctcctcttctttagcccctccatccccaaccgtgggctct
ggaccagagcgagatgcagacacgcccacttccgtctctgccagctcctcgccaacgcgc
tccacctgcagagagcccacagcgcctccgcctgcagcgcagctccacgtcaacgccacg
gagaaagaggacgccagtgaggacggggtggagaaggcggaccaagaaaataacagctga
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