Oryzias latipes (Japanese medaka): 101157537
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Entry
101157537 CDS
T02443
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101157537 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101157537 (xab2)
03041 Spliceosome [BR:
ola03041
]
101157537 (xab2)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101157537 (xab2)
Spliceosome [BR:
ola03041
]
Complex B
Other components
Prp19-related factors
101157537 (xab2)
Complex C
101157537 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
101157537
NCBI-ProteinID:
XP_004071406
UniProt:
H2LNL3
LinkDB
All DBs
Position
8:complement(8749446..8758212)
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGLKTNLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEANNCHERALVFMHKMPRIWLDYCQFLVLQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVHNLPVPETAVRVYRRYLKLSPENAEEYIG
YLRTVGRLDEAAVRLAAIVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETNSEMGQDEEDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGTPRQIINTFTEAVQTVDPMKATGKPHSLWVCFAKFYEENEQLDDARTIFEKATKVN
FKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVEPEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEL
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDEDEDDDDRGPDEVQLEQKSIPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccatcattaaacggaaaagctgatgttatttttgaagatgatgacctgccttacgaa
gaggagatcatcaggaatccgtactctgttaagtgttggatgcgttacattgaattcaaa
caaaatggacttaaaactaaccttaacatgatatatgagcgggctttgaaggaactacct
ggaagctataagttgtggtataattacctgagagagaggcggaaacaggttaaagggaaa
tgcatcactgaaccagcctatgaggaagccaacaattgtcatgagagggctctggtgttc
atgcacaagatgcctagaatatggctcgattactgccagttcctcgtgttgcagtgtaaa
atcacaagaagtcggcggactttcgaccgcgctctcagagcccttcctgtaactcaacat
ccacgaatctggcccttgtatctccgctttgtccataatcttcccgtgcctgagacggct
gtccgagtataccgcagataccttaagctgtctccagagaatgcggaagaatacataggg
tatttgcgaactgttggtcgcttggacgaagcagctgtacggctagctgcaatcgtcaat
gatgagaactttgtgtccaaagagggcaaatccaactatcagctgtggcacgagctctgc
gacctgatctcccagaatcctgataaggtgacctccctaaatgtgggagctatcatccga
ggaggtctcactcgcttcacagaccagctggggaaactttggtgctctttggctgactat
tacatcaggagtggccactttgagaaagctcgagatgtgtatgaggaagccatccttaca
gtggtcactgtaagagactttacacaggtttttgatagttatgctcagtttgaggagagc
atgattgctgctaagatggagaccaattctgagatggggcaggatgaagaggatgacgta
gacctggagcttagactggctcgctttgagcaactcatagctcgtcgaccacttttgctc
aacagtgtgctcctaaggcagaacccccataatgtccacgagtggcacaagagagtaaaa
ctgtatgaggggactccacggcagattattaacacttttacagaggctgtgcaaactgtg
gatccaatgaaagccactggaaagccacactcgctctgggtgtgttttgccaaattctat
gaggagaatgagcagctggatgatgcaagaacaatttttgagaaggctaccaaagtgaac
ttcaagcaggtggatgaccttgctgcagtttggtgtgaatacggcgagatggaacttcgt
cacgaaaactatgatcaggcactccgcatactgaggaaagccacagccatcccatcaaag
aaggcagagtattttgattcatctgagccggtccaaaaccgagtctataagtccctgaag
gtttggtctatgctggcagacctggaggaaagtctcggcaccttccagtctacaaaagca
gtatatgatcgcattattgatctccgcatcgccactccgcaaatcatcatcaactatgcc
atgttcctggaagagcacaattactttgaggaaagcttcaaagcatacgagcgaggaatc
gcactttttaagtggccaaatgtgtatgacatctggaacacctacctcaccaagtttatt
gaccgttatggtggcaagaagctggaacgagccagagatttatttgaacaagctttggat
ggctgccctgccaagtttgccaaaaccatctatctgctgtatgctaaactggaggaggag
tatggattggctcgtcacgccatggctgtctatgaaagagcaacacaggcagtggaaccc
gaggagagacatcatatgttcaacatctacatcaagcgagcagctgaaatatatggagtg
acatacaccagagccatatatcagaaagcaatcgaggtccttcctgatgagcacgccaga
gacatgtgtctgcgatttgctgatatggagagtaaacttggggagattgatcgggccaga
gcgatctactcctattgttctcagatctgtgaccccaggttgacagcaaacttctggcag
acttggaaagaatttgagatacgccatggaaatgaagacaccatcagagagatgttgagg
atcaagcgcagtgtccaagctacctacaacacccaggtcaactttatgtcctcacagatg
ctgaaagccactacaagctccacaggcactgtgtcagaccttgctccaggccagatgggc
atcgatgatatgaagatgctggagcagaaagcccagcagcttgcagccgaggcagagctg
gacaaacccaaacctaaggagaagattctctttgtcaggagtgatacatctcgtagtgag
ttggctgaactttctaaacaagccaatcctgatgagatcaacatcgatgatgaggatgaa
gatgatgacgaccgaggacctgatgaggtgcagctggagcagaagagcatccccacagct
gtctttggaggactgaaagaagactga
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