Oryzias latipes (Japanese medaka): 101157983
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Entry
101157983 CDS
T02443
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101157983 (pms1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
101157983 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
DUF1104
Motif
Other DBs
NCBI-GeneID:
101157983
NCBI-ProteinID:
XP_004081873
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Position
21:complement(16530896..16546522)
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AA seq
909 aa
AA seq
DB search
MKLLPPDSVRLLSSSQVITSVVNVVKELLENSLDAGASSIDVKLENFGLDRIEVRDNGHG
VKAADASVMAVRHFTSKICSHEDLEHLETYGFRGEALGSICAVAELIVTTKTEEDDISTQ
YTLDPTGKIVAQKPSHLGQGTSVTALKLFKNLPVRRQYYTSTKKCKEELKKVQDLLITYA
IIKPELRLSLVHNKVVVWQKTKVADNRSALLATLGPSVVANLLQCHQQQEEPEIILDGFL
PKPGADYSSTSSSAPDKTFLYVNNRPVQLKEIMKLLRQHYCAQYLEDAVRNRYPILMLNI
TVSPSSLDVNLTPDKSQVLLHDKEAVLTAVEALLVSLYGFRPSSDPSAEKQLSHEKAVPS
LSPLQTDALQEGKEGGVVNALSLNVEDNVLDDEHEHGGAVSSTGNAHTLIDRQPSNGSSS
SSIADDWIVSHIPTEPQSDFSLCEIEMSENISVESLTETESPAADASKDQIPAEDWSRGT
ALIDPSSGEALQPITIHQPSKPNQSDLAQVKGQSSPNKKMVNAITEKGAALTAYDMISNR
TIRGPLSAAALFKKEARAEVLREKPTASLQEISIAVHERWKNLREEDRKKYEEQAKKHLE
HHSQKTKQASEDRCKEPAANTPKAQVPGQKRKAPLSNQQLLDELFTVQPQKKLKMPECKA
TQPLPCSVAALRLKLQRLSSQSHATPRDLQLVNRLASQNAWVILCGQKLMLLNAFGVNEA
LLFKRLLEDNILPATSLQNPVQLTDGNLGGAQYTETLCGMEKHKPELDGGVFFSDLRLVA
NGFKIKLTGGLMSAERHLEVTAMANCVPFLGVEDLREILTAILHRNASTVKECRPLKVRS
YLQSEAVRLARQLPTSLSREDAEETLQRMKLQLSEDNRACIHGRPFLHHLSDIPSTDDEA
MRLFRPLQF
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgttgccaccagactcagtgcggctgctgtccagctcccaagtcatcacgtct
gtggtgaatgttgtgaaagagctgctggagaactccctggatgctggcgcttcaagcatt
gatgtgaaactggagaattttggcttggatcggatagaggtgcgtgacaacggccatgga
gtcaaagctgcagatgcttctgtaatggccgtgagacatttcacctccaagatttgtagc
cacgaagatctggaacatctggaaacctatggcttcaggggggaggcattgggttcaatc
tgcgctgtggctgagctgattgttaccacaaaaacagaggaggatgacatcagcacccag
tacactcttgaccccactgggaaaatagtcgctcagaaaccatctcatcttggtcagggc
acatcagtgactgcgctcaaactctttaagaaccttccagtaagaaggcagtattacact
tccacaaagaagtgcaaagaagaactgaagaaagtgcaggacctgctcatcacctatgct
atcataaaacctgaactaagattatctctagttcataataaggtggtggtttggcagaag
accaaggtcgctgataacagaagtgccctcctggccactctggggcccagtgttgttgcc
aacctgcttcagtgccaccaacagcaggaggaacccgagatcatcttggatggttttctt
cctaagccaggagctgattattcatctacgagctcatctgctcctgataaaaccttcctg
tatgttaataaccgacctgtccagctaaaggaaataatgaagctattgcgtcaacactac
tgtgctcagtatcttgaagatgcagttcgaaatagataccccatccttatgctcaacatc
acagtgtccccttcatcactggatgtgaatctgacaccagacaaaagccaggttctcctt
catgataaggaagctgtgctgacagcagtagaggccttgctggtctccctctacggcttt
cgacccagttctgacccatcagctgagaaacagctgagtcatgaaaaggctgtcccatca
ctgagtcctctgcagacagatgctttacaagaaggaaaggaaggtggcgttgtgaatgct
ctcagtctcaacgttgaagataacgtccttgatgatgaacacgaacatggtggcgcagtt
tcatctacaggaaacgcccatactctaatagaccgccagccctcaaacggcagctcctca
tcctctatagcagatgactggattgtcagtcacatcccaacggagcctcagtcagacttt
tccctttgtgaaattgaaatgtcagaaaacatatcggttgagagtcttacagagactgaa
tcaccagctgctgacgccagtaaagaccaaataccagctgaggattggagtcggggcacg
gctctgattgatccttcatcaggagaggctctgcagcccatcacaattcaccagccatcc
aagcccaatcagtcggacttagctcaggtcaagggtcagagcagccctaacaaaaagatg
gttaatgctataacagagaaaggagctgctctgacagcttatgacatgatcagcaaccga
accatcagagggccactgtctgctgctgccctgttcaagaaggaggccagagcagaagtt
cttagggagaaacccacagccagtcttcaggaaatcagcatcgctgttcacgagaggtgg
aaaaacctaagggaggaagaccgtaagaagtatgaggaacaggcgaagaaacatctggaa
caccacagccaaaagaccaaacaagcatcagaggaccggtgtaaagagcctgctgcaaac
acgccgaaggcgcaagtgccgggtcagaaacgcaaagcgccgctctccaaccagcagctg
ctcgacgagctctttaccgtgcagccccagaaaaagctgaaaatgcctgagtgtaaagct
actcagcccctcccgtgtagcgtggctgcccttcgtctaaagctccagcgcctctcatcc
cagagccatgcaacgccacgggacctccaacttgtaaaccgactggcctctcagaatgcg
tgggtcattttatgtggtcagaagctgatgttgttaaacgcatttggtgtgaatgaagcc
ttgctgtttaagagacttctagaggataatatacttcctgcaaccagtctgcaaaaccca
gtgcaattaacagatggaaatcttggtggagctcagtacaccgagacactgtgtggcatg
gagaaacacaagccggagctggatgggggggtctttttctctgatctcaggctggtggct
aatgggttcaaaatcaaactcactggaggcctcatgtcagcagagagacatctggaagtg
acggcaatggcaaactgcgtgccttttcttggcgtggaggatctcagggagatcctgaca
gcaattctccacaggaacgcctcgactgtgaaagagtgccggccactcaaagtcagaagc
tacctgcagagtgaagcagtccgactggctcggcaactgcctaccagtttgtctcgggaa
gatgctgaggaaacccttcaacggatgaaactgcagctcagtgaggacaacagagcatgt
atccatggacgaccgtttctccatcacctcagtgacatcccttctactgatgatgaagct
atgagactttttagacctttacaattttaa
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