Oryzias latipes (Japanese medaka): 101158365
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Entry
101158365 CDS
T02443
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101158365
Spliceosome [BR:
ola03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101158365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
HAT_Syf1_CNRKL1_C
TPR_12
TPR_11
TPR_21
UTP6_C
HrpB1_HrpK
TPR_MalT
Iml2-TPR_39
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
101158365
NCBI-ProteinID:
XP_011478333
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All DBs
Position
10:12368190..12375028
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AA seq
713 aa
AA seq
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MAEEGREEMSSNGESSGAMDTSDLSPPPPAEASEDNGSAATGPEAPADPDPASFSAPPEA
QEGDLPADFEHLWKAAHDRPQDFTSWTDLLQYCEQEGHVVASHRALQAFLTHYPLCYGYW
KKFVDLERRTGSNDKAEEVCIRGLRAIPLSVDLWIHYVNLLLGTLDMNLSDSPTRIRRVF
EDCLTAAGMDFHSDRLWDLYVEWEKEQGNLRKATAILDRVLKVPTQLYNTHYDKLKEHIN
SHPPKDVLSPEEYEELRALCRQSQKAERAQQAQQEDEERPPGEEGPATPEGVDSEELMQK
IRERVLAVRDKVYQENEEEVRKRWHFEEAIKRPYFHVKPLDRAQLQAWHAYLDWEMAELH
RDSRDTTQDPSQAAVEGSEPHDAPKDAGIARSDHRVRVLFERCLIACALYEELWTRYIRY
LELQSAEEARAVYRRACQIHLPQRPNIHMQWATFEERHGDIAEARRVLEELEKKLPGLVV
VRLRRAALERRAGQLEQAESLLREAVAQSTEKPPLHAFYSIKLARLLLKVGRNSSEARRV
LQEALEMSPENEKLHLNLLELEVSDASAEAVQECVRRALEAPLTPDTKILLSQRGLQFSE
DFSSSIKSVISVYEAHQKLLSELGGTKRPADNGDEDPEKQSKTEEDSTVAAAATQAAPTT
THVPITTPPPPVSADVSAQTGYGAYSSWYQQPQYGGYGYQNSWNYNQGYYPPS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagggccgtgaggagatgagcagcaacggagaatcgtcaggtgccatggat
acctctgacctttccccgccacctccggccgaggcatcggaggacaacggcagtgcggcc
acaggacccgaagcccccgcggaccccgaccctgcatctttctctgcgccccccgaggcc
caggaaggggacttgcctgccgactttgagcacctgtggaaggcggcacacgacagacct
caagacttcaccagctggaccgacctgctgcagtactgcgagcaagagggtcacgttgtt
gcatcacacagagcactacaggccttcctcactcattacccgctctgctatggctactgg
aagaaatttgtagatctggagcgtcgcaccggatccaacgacaaagcagaagaggtgtgt
attcggggcctccgagccatccctttgagtgtagatctgtggatccactatgtaaacctg
ttgctgggaactctggacatgaacctgtcagattctcccacacggatccgcagagttttt
gaagactgcctcacagcagcagggatggatttccactccgaccggctttgggatctgtat
gtggagtgggagaaggagcaggggaacttgagaaaggcaacagccatcctggacagagtg
ctcaaagtccccacccagctctacaacacccattatgacaagttgaaagagcacatcaac
agtcatccacctaaggacgttctctctccagaggagtacgaggagctgagggcgctgtgc
cgtcaaagccagaaggcggagcgcgcccaacaggcccagcaggaggacgaggagagacca
ccgggggaggaggggcccgccacacctgaaggggtggactctgaggaactcatgcagaag
ataagggaacgagtgctggccgtcagagacaaggtgtatcaggaaaacgaggaagaagtc
cgcaagaggtggcactttgaagaagctatcaaacggccgtatttccacgtaaagccgctc
gatcgtgcgcagcttcaagcttggcacgcctacctggactgggagatggccgagctgcac
agggacagcagagacaccacacaagatccaagccaagcagctgtagagggatccgaacct
cacgatgcaccaaaggatgctgggattgcccgcagtgaccacagagtccgtgttttgttt
gagcgctgcctcatcgcctgtgcgctgtacgaggagctgtggaccaggtacatcagatac
ctggagctacagagcgctgaggaggcgcgtgccgtttaccggcgagcctgccagatccac
ctgccacagaggcccaatattcacatgcagtgggccacgtttgaggagcggcacggtgac
atcgctgaggctcggagagtgttggaggagttggagaaaaaactgcctggtctggtggtg
gtccgcctccgcagggctgctttggagaggcgggcgggtcagctggagcaagcagagtcc
cttctgcgtgaggctgtggctcagtccacagagaaacccccattacatgccttctactcc
atcaagctggcccgtctgctgctgaaagtgggcaggaactccagcgaggcgcgcagagtt
ttacaggaagccctggaaatgagtccagaaaacgaaaagctccacctgaacctgttggag
ctggaggtgtcggacgcctcagccgaggccgtgcaggagtgtgtaaggcgagcgctggag
gctcctctcactccagacaccaagatcctcctctcacaaagaggccttcagttctctgag
gattttagcagttccatcaagagcgtgatttctgtatacgaggcgcaccagaagctgctg
agcgagctgggcggaacaaagaggccagctgacaacggagacgaggatccagagaagcag
agcaaaaccgaagaggactccaccgtcgctgccgccgccacccaggctgcccccaccacg
acgcatgtccccatcaccaccccgcctccccctgtgagtgccgacgtgagcgctcaaacg
gggtacggagcgtacagcagctggtaccagcaaccgcagtacggcggctacggctaccag
aacagttggaactacaaccagggctactatccgcccagctga
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