Oryzias latipes (Japanese medaka): 101158519
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Entry
101158519 CDS
T02443
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ola03009
]
101158519 (ighmbp2)
03012 Translation factors [BR:
ola03012
]
101158519 (ighmbp2)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101158519 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
101158519 (ighmbp2)
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
Other ribosome biogenesis factors
101158519 (ighmbp2)
Translation factors [BR:
ola03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101158519 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
ResIII
Helicase_RecD
nSTAND3
AAA_16
AAA_22
UvrD-helicase
IstB_IS21
Flavi_DEAD
SLFN-g3_helicase
DnaB_C
PhoH
SRP54
AAA_25
AAA
NPHP3_N
Zot
AAA_31
ATPase
HEM4
ATPase_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
101158519
NCBI-ProteinID:
XP_011474373
UniProt:
H2LQ96
LinkDB
All DBs
Position
6:16103770..16110849
Genome browser
AA seq
978 aa
AA seq
DB search
MEVETFVSKTLELLQEEREAEIEETRTWQENRSLKDLQSKGICLLKLQIGSQFTGLYGRT
VLVLEPRKHLGFSSLPSNCFGPGDIVGLYDAAGCSATSQICTGIVTRVSQASVSVAIDIL
KDDAVLDTNSLYNLLKLANDVTYKRMKRALNVLNGYSNGPAGNIINVLFGNAQPSSHSQP
IEVQFFNSNLDDSQREAVMFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLAQCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
VLMGMKKEKGERGNYKREIGELKKELKSREATAITQILKGADVVLSTNTGACDDGPLKLL
PAEHFDWVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQAAASKGLSLSLME
RVIQIYGDVVVRMLTVQYRMNSAIMEWASKEMYQGKLTAHCSVESHLLKDLTGVASVAET
STPLLLIDTAGSGLTEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYNLQ
VDLLRQRLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLSEDRRINVAVTRA
RRHIAVVCDTQTVQNHAFLKSLVDHMTEMGEVRTAFEYLEDTVPQNYTRTRKEVKTTSAS
TSTKLKTRDQPSSKVKPVQKKSGNSCKENTAGSQNQATSEQEQSKSRRAEIREQVESFMK
DLKQSDLQFPASFNSHDRLLVHQIAEELGLVHESKGEGSDRHITVSRPLKSPPAQKVRQE
ELTQEEETVSNGNEAASILQSDPLPQPSLDLKSLHLERMKREQKRREEAAQRKQQNSIPA
AKEQQMKKTKGKSKTKPGACDVAGADDFDALISAVMKADSICSFVKCKASVLTLGQLCLF
CNRQYCLSHHIPEVHGCGDKAKSQARMRISKEGVLYAGSGKKDKSMDPNRKAHLQRKLDS
KLKDMASQRKPKGTEKEN
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggagacatttgtatctaaaacccttgaactattacaagaggagcgagaggca
gaaatagaggaaaccagaacatggcaggagaaccgttccctaaaggatcttcaaagcaaa
ggcatttgtctgctgaaactgcagataggcagtcagttcaccgggctctacggacgcaca
gttcttgttctagagccaagaaaacatcttggtttctcctctcttcctagcaactgcttt
ggtcccggcgatattgttggcttgtatgatgcggctggatgcagtgcaacctcacagata
tgcacagggatagtaaccagagttagccaagcatctgtaagtgtggccattgatattcta
aaggatgatgctgtcctggatacaaactcactatacaacctcctaaaattggccaatgat
gtcacttacaagcgaatgaaacgagcgctgaatgtgttaaatggatatagcaatggacca
gctggcaatattataaatgtcctttttggaaacgcacaaccatcatctcattcacaacca
attgaagtccagttttttaactcaaacttggatgactcccaaagagaagctgttatgttt
gctctgtcacagagagaactggctgtgattcatggtcctcccgggacgggaaaaaccacc
actgtagtggaaatcatcctgcaggcagtgaaacaaggccagaaggtgctgtgctgcgcc
ccctcaaatgttgctgtggacaatttagtggaaaggttagcacagtgcaaagccaaagtc
ctgagactgggacaccctgccagactgctggagtccatccagaaacactcgctggatgcc
atcctcgctcagagtgacaacgcaaacatcatcgctgacatccggaaagatattgataaa
gtattaatgggaatgaagaaggagaaaggtgagcgcgggaactataaacgagaaataggg
gagttgaaaaaggaactaaaatccagggaagctacagccatcacccaaatcctgaaggga
gcagatgttgtgctgtcaaccaacaccggggcctgcgatgatggtcctctgaagctcctg
cctgcggagcattttgactgggtggtcatagatgagtgtgctcaggctttggagagcagc
tgctggattgcactgctgaaagcacgaaaatgcattctggctggggactacaagcaactg
cctccgacaatcaaatcacaagcagctgcatcaaaaggattgtctctgagtctcatggaa
agagttattcagatctatggagatgtagtggtccgcatgttaacagtccagtaccgaatg
aacagtgccatcatggagtgggcctccaaggagatgtaccaagggaaattaacagctcac
tgctcggtggaaagccatttgttaaaagatctcacaggcgttgcctctgtcgccgagacg
agcactccacttcttctgatcgacacggcaggaagcggcctgacagagatggaggtcaca
gacgaacagtccaaaggcaaccaaggtgaggtagacattgttgaactgcacataaaggcc
ttaactgaagctggtgttaaagccaaagacattgctgtcatcgctccatacaatctgcag
gttgatcttctgcgtcagagactttctgctcggcatccagagctggagataaagtcagtg
gatggattccaaggcagagaaaaagaagctgtagtgctctcattagttcggtccaacaga
aaaggggaagttggatttctgtcagaagacagaagaataaatgtagcagtcacacgagcg
agaagacacatcgctgtggtgtgtgacactcagactgtgcagaaccacgccttcctgaag
tccctggtcgatcacatgactgaaatgggcgaggtcagaacagctttcgaatacctggag
gatactgtaccacagaactacactcgcacccgcaaagaagtaaagaccacatctgcgtct
acatccaccaaactgaagaccagagatcagccctcgagcaaggtgaagccggtgcagaag
aagtctgggaacagctgcaaagaaaacacagctgggtcacaaaaccaagcaacgtctgag
caagagcaaagcaagagtagacgcgctgagatcagagaacaggtggagagctttatgaag
gacttaaaacaaagtgatttgcagttccctgcatcctttaactcccacgaccgtctgctg
gtccaccagattgctgaggagctaggtctggttcatgaaagtaaaggagagggcagtgac
aggcacataacagtctccaggcccctaaaatcaccaccagctcagaaagtgagacaagag
gaactgacccaggaagaagaaactgtctccaacgggaacgaggcagcttccattctgcaa
agtgacccgttgcctcaaccgtcattagacctgaaaagtttacacttggagagaatgaag
agggagcagaagaggagggaggaggctgctcagaggaagcagcagaacagtatccctgca
gctaaggagcagcaaatgaaaaagacaaaagggaaaagcaaaacaaagccgggagcctgt
gacgtcgccggcgccgatgactttgatgctctcatcagcgctgtcatgaaggctgacagc
atttgtagttttgtcaagtgtaaagcatctgtgttaacactcggacagctttgtttgttt
tgcaacaggcagtattgcctcagtcatcacataccagaggttcatggctgtggagataag
gccaagtcgcaggctcggatgaggatcagcaaagagggggttctttatgcaggaagcggc
aaaaaagacaagtccatggatccaaataggaaggcacacctgcagagaaaactggactct
aaattaaaggacatggcatcacagaggaagccaaaaggcacggaaaaggaaaactaa
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