Oryzias latipes (Japanese medaka): 101158660
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Entry
101158660 CDS
T02443
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04382
Cornified envelope formation
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04518
Integrin signaling
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101158660
04518 Integrin signaling
101158660
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101158660
09142 Cell motility
04820 Cytoskeleton in muscle cells
101158660
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101158660
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
101158660
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
101158660
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101158660
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101158660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101158660
NCBI-ProteinID:
XP_011490995
LinkDB
All DBs
Position
13:447424..479426
Genome browser
AA seq
1670 aa
AA seq
DB search
MLQTPCSTSRSVILLWYLLFFFCASPAACRGKHMEPCNGRDCSTCRCFPPKGEMGVPGPL
GQQGPQGLPGTFGPQGPPGPKGQKGDEGEAGPLGPKGHIGIRGLRGFPGLDGIEGHPGPA
GGPGLRGQDGCNGTRGDQGLPGLQGPQGADGAWGLPGPKGYPGGSAVFFFQHPGTPGDPG
PPGLPGVQGKPGLLGPPGLSGPAGQNGNIGEPGEPGPRGPPGENGQAVPGPKGDEGDQGQ
EGPPGPFEYVDPPEDRYIKGDQGPPGVKGAAGVQGAPGLDARPGVKGEKGIVGFPGPRGV
IGRPGPGGGKGIKGRKGEQGLPGLFGQDGSKGIKGDQGPKGPPQSRDVTHVGDFGDPGAP
GFPGPPGHMGHMGFHGPPGPPGASVPGPRGLPGIKGSQGSKGEKGDPGQMITDGKTPGEP
GKPGFPGYTGLKGEPGTPGSYCLPGIPGLRGEPGVQGPPGATGFSGFRGETGPCSCGPPI
NTPGPPGPSGLSGSPGFPGVQGSQGQRGEAGSLGDAGLRGEEGLVGDQGPKGLKGQKGSF
RVVDFKGEKGDQGPPGLLGRTGYSGQAGLSGNPGASGITGPEGDEFAGVTGDRGPPGPSG
RKGLLGPAGPPGQGFMGAIGWRGAPGAPGLIGFPGPPGPKGIQGDTLPCGPQSFGAPGQK
GDSGLPGYMGDPGPPGYPGGTGLDGLKGDKGQTALPGPLGKTGPRGMVGDTGEEGPEGLS
FIGDRGSPGLPGLTGLQGSTGDSEVGDMGPPGPPGPLGFPGPKGMPGPLGKDGEPGLAGL
PGDPGVKGHRGQDGAHGLMGPPGFQPVSCDAGKAGERGQRGISGPRGPRGPTGLKGEAGP
NGPECPGSKGDVGRQGISGSPGGPGPTGPTGPPGDQGWPGLVGEKGLTGPQGERGLPGNL
GRTGGPGALGKPGETGLCGRDGPPGYEGVKGEKGSKGDVGPPGHTNVILIKGPKGEQGPP
GENGLTGPRGDKGVKGDPGHPGYLGNCGPPGIKGFQGPKGPQGKPGYPGLAGRIGLRGQP
GNPGWPGDPGDTGCPGQPGEPGHLGCPGPPGDKGESIGCPGVPGYKGHPGFLGLQGPPGP
PGDHGGIGSPGLPGQKGCKGERGCHGNPGEPGVQGPRGPRGHPGYPGLAGAPGADGPPGS
TGAQGLPGPPGPLGLHGLDGLKGVKGDMGTKGLTVIGPKGPQGPPGEKGPPGPPGPYGTS
QSGPPGPKGPQGSKGPQGRTGSVGEPGPDCTNPLPGPRGDPGCQGPDGETGFPGERGFPG
PNPPVRGDGGDNGLPGSPGLPGERGKPGSPGRVGYRGDMGVKGEKGDKGWIGLPGDKGPN
GHLGSMGRPGSKGFPGPAGIKGEKGQVLPSQPCLPGQTGPAGLPGPPGPAGDCGLSGENG
RIGAKGEKGEPGDQGPIGETGPMGPKGERGNLGLHGEEGTEGEKGTRGAVGDTGPGAPCQ
EKTMGFLLVVHSQSESIPRCPLQTEKLWEGYSLLYLEGQEKAYTQDLGAAGSCVRVFSTM
PFSSCDMNRCLYASRNDKSYWLSTMANVTREPVMGDSIRSLISRCVVCEAPSTPVAMHSQ
NSIEPECPSNWATLWTGYSFIMHTGAGDEGGGQSLTSSGSCLTEFKSLPFLECQGPRGTC
HFFANIYSFWLTHQEGGASYTRRNSSTLIDPMQHKNNISRCRVCMKLTNQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagactccctgttctacctccagaagcgtcatcttgctttggtatctcctgttc
tttttctgcgcttctccagcagcctgcagggggaaacacatggagccgtgcaatggacgg
gactgctccacctgtcggtgtttcccgcccaaaggggagatgggagttccaggtcctttg
ggtcagcaaggccctcaagggctgccaggtacctttggccctcagggacctccaggacca
aagggacagaaaggagatgaaggggaagcaggaccccttggacccaaaggccacattgga
atcaggggcctaagaggttttccgggtttagatggaatagagggtcatccaggacctgct
ggaggtccaggtcttcgtggtcaagatggatgtaatggaactagaggagaccaaggacta
cctgggcttcaaggaccacaaggggcagatggagcatggggtttaccaggaccaaagggg
tatccagggggttcagcagttttcttcttccagcacccaggaacaccaggagatcctggg
cctcctggactgcctggagtccagggcaagccaggtcttctgggtcctccaggtctttct
ggtcctgcagggcagaacgggaacatcggtgagcctggtgagcctggtcccagaggtcct
cctggagaaaacggtcaagctgtgcccgggccgaaaggagatgagggagatcagggccag
gagggacccccagggcccttcgagtacgtggaccccccagaggaccggtacatcaaaggg
gatcagggacctcctggggtcaaaggagcagctggagtgcagggagcaccgggcttggat
gcccgtcctggggtcaaaggagagaaaggcattgtgggattcccggggcccaggggtgtc
atcggtcggcctggtccagggggggggaaaggtatcaagggacgtaaaggggaacagggt
ctgccaggcctgttcggacaggacgggtcaaagggcattaagggagatcagggccccaaa
gggcccccccagagcagggacgtcacacacgtcggggacttcggagacccgggggctcct
gggtttccaggtcccccaggacacatggggcatatggggtttcacggtccaccaggaccc
ccaggcgcgtcggtgccgggaccaagaggtcttcctggcataaaaggatctcaggggtct
aaaggggagaaaggagatccaggtcaaatgattacagacggaaaaacaccaggagaacct
gggaaaccaggatttcctggatacacagggctaaagggagagccaggaactccaggaagt
tactgtcttcctgggataccaggactgcggggggagccaggtgttcaggggcccccaggg
gccactggcttttctggatttagaggtgagaccggtccctgctcttgtggccctccaatc
aacacacccggacctccagggccttcaggtctctctgggagtccagggttcccaggagtc
cagggatcccaaggccagagaggagaggctggttctctgggagatgcaggacttagaggg
gaagagggtctggttggagatcaaggccctaaagggctaaaaggtcagaaagggagtttc
agagtggttgattttaaaggcgagaagggagatcagggccctccaggtctgctaggcaga
acaggatactctggacaagctggactcagtggaaatccaggggcctccggaatcacgggc
cctgagggggacgagtttgctggtgttactggagacagaggtccaccaggaccatcggga
cggaagggcctcctgggacctgcagggccccctggacaggggtttatgggagcgatagga
tggcgaggtgcccctggggctccaggacttataggatttcctggacctccaggaccaaaa
ggcattcaaggtgacactttgccctgtggtcctcagagttttggtgctcccggacagaaa
ggagactctggactcccaggttacatgggagacccaggtcctccaggttatcctggagga
acagggctggatggtctaaaaggagataaaggacagactgcactgccaggaccacttggg
aaaacaggacctcggggtatggttggagatactggagaagaaggaccggaaggccttagt
ttcattggagacagaggctctccaggacttccgggcctgactggacttcagggatcaact
ggggactctgaagttggggatatgggacctcctggcccccctggacctttggggtttcca
ggaccaaaaggcatgccaggacccctaggcaaagatggagaaccaggtttagcaggtctg
cctggagaccctggagtgaagggccacagaggacaggatggagcccatggtttgatgggg
cccccagggttccagcctgtatcatgcgatgcaggaaaagctggcgaacgtggccagagg
ggcatcagtggacccagaggaccacggggtcctacgggccttaaaggagaggcggggcct
aacggtccggaatgtccaggctcaaaaggtgatgttggtagacaaggcatttcaggttct
cctggcggtccaggacctacggggcccactggtccgcctggagaccaaggctggcctggg
cttgttggagaaaagggactgaccgggccccagggagagagaggactgcctggaaattta
ggaaggactggaggtcctggagccctaggcaagcccggagagacgggcctctgtggacga
gatggacctccaggatatgaaggagtgaagggagagaagggctccaaaggagatgtgggc
cctccaggacataccaacgttatcctaattaaaggtcccaaaggagagcaggggcctccc
ggagagaatggactcactgggccccgaggggataaaggtgtgaagggggatccaggtcat
cctgggtatctggggaactgtggacccccaggaataaagggatttcagggacccaaagga
ccccaagggaaaccagggtatccgggactagctggacgtataggactgcgaggacagcca
ggcaatccaggatggcctggagacccgggtgacacaggatgtcctggacaaccaggagag
cctggtcatctgggatgtccaggacccccaggtgataaaggagaatctataggctgtcct
ggagtgcccggatacaagggccatcctggattcctaggcctccaaggccctccagggcct
cctggagatcatggaggtatcggcagtccaggactcccagggcagaaaggatgcaaagga
gaacgtggttgccacggaaaccctggagaaccaggcgtgcagggtcccagaggccccaga
gggcatccaggttatccaggtcttgcaggtgcacctggagctgatggaccaccaggatca
accggtgctcagggacttccaggtcctccgggaccactggggctccatggactggatgga
ctgaaaggagtcaaaggggacatggggactaaaggtctgactgtaattggtccaaaagga
cctcaaggtcctcctggtgagaaaggtcctccaggtcctcctgggccttatggtacatca
caatcaggacccccaggaccaaaaggcccccaaggatctaaaggacctcaaggaagaaca
ggatcagttggagagccaggaccagactgcacaaacccacttccagggcctcgtggagat
cctggttgtcagggaccagacggagagacagggttccctggagaaaggggtttcccaggt
ccaaaccctccagtccgaggtgatggtggagacaatggtcttccaggcagtccaggcttg
ccaggagaaaggggaaaaccggggagccctggacgagtgggctacagaggagatatgggt
gtaaaaggagaaaagggggacaaaggttggattggactacctggtgataagggtccaaat
ggtcatctgggttctatgggacgtccgggatcaaagggatttccaggaccagcaggaata
aaaggagagaagggacaggttcttccctctcaaccttgtcttccgggacagacgggccct
gctggtctacctggcccccctggtccagctggagattgtggtctgagtggagaaaatggt
cgaataggggcaaaaggtgagaagggagagccgggggatcaggggccaataggagaaaca
gggccaatgggtccaaagggagagcgaggcaacctgggactgcatggagaggaaggcaca
gaaggagaaaaggggaccagaggggcagttggtgacacaggtccaggggcaccatgccag
gaaaaaaccatgggcttcctgctggtggtgcacagccaatcagagagcatcccccgctgc
ccgctgcaaacagagaaactgtgggagggatacagtctgctgtacctggaggggcaggag
aaggcctacactcaggacctgggtgctgcaggttcctgcgttcgagtcttctccaccatg
ccgttctcctcctgcgacatgaacaggtgcctctacgccagcaggaacgacaagtcctac
tggctgtcaaccatggcaaacgtgaccagggagcccgtgatgggcgactccatccgaagc
ctcatcagccggtgtgtggtttgcgaggcgccctccacacctgtggccatgcacagccag
aactccatcgagccagagtgccccagcaactgggccactttgtggaccggatactccttc
ataatgcatacaggagcaggcgatgaaggtggcgggcagtctctcacgtcttcaggaagc
tgtttgacagaattcaaatctctgccctttctggagtgccaggggcctcgagggacctgc
cacttcttcgccaacatctacagtttctggctgacacaccaggaggggggagcctcctac
acccgcaggaactccagcacgctgatcgaccccatgcagcacaagaacaacatctccagg
tgcagggtctgcatgaagctgaccaaccaatga
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