Oryzias latipes (Japanese medaka): 101158960
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Entry
101158960 CDS
T02443
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101158960 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101158960 (nup188)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101158960 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
101158960
NCBI-ProteinID:
XP_023816850
LinkDB
All DBs
Position
12:8136093..8153990
Genome browser
AA seq
1745 aa
AA seq
DB search
MAEVKMADSQISVRSCRELWTILLGRSALREPAQIEAELERHWDRLHQGLSYYKQPSSSS
AGKVKENKNVPQPLKDFGLRISKLLNLDEEQSVQLLQCYLQEDYRGTRDSLKVVLKDDRQ
SQALLLKIADYYYEERMCLLRCVLLLLTYFQDERHPYRAEYSNCVNKLEKDLVGNCQSQF
EALFKAEAPTWETHGNLMTERQVSRWFLRCLKEQSLLLEIIFLHHAYFEMSPSDLLSFTK
MFKEQGFGLRQTNRHLVDKSMDALVDRIGYLSCLILVEGMDVDFLHKCALEDCTQQHQFS
SAPNIIKEMDQLLLTFGDIPHHGPVLLAWVLLRHTLRPDESSPVVRRIGHTALQLEVFKY
LSSMLKGLGVLGNNCTASTARMCIYGLLSFVITSFEEESLQIDGVSTQSSQLIDAACEVL
SAPSLAEVFWEMKPNMGLGMVLDSAAGMFPHKIGPLLQLLTALVSNKSTVKKVYNFLDKM
SFYTQVYKHKPNDIVSNDEETLWRRQTPKLLYPLGSGSGQTNLWMPQGVLGQVMIAGEQG
FMVRWDYSYSSWTLFTCEVEMLLHVVSTADVIAHCVRVKPILDLVHKIISTDWTVSDCLL
PLTSRIYMLLQRLTSVINPPVDVIASCVNCLSVLAARMPGKVWSSLHHTGFLPFASNPLS
TMAQCVSAEGMKAANYGNLLVQNEQPRGEYAVTIAFLRLLTTLVKGQLGSTQNKGLIPCV
LLVLKEMLPTYHKWRYNTYGVRERIGCLMLELIHAILNLSPDGEDQGSTPTLQSLCIYCL
TNTEAGQAVVNIMGVGVDTIEVVLAAQPSSYGSEGPGQILIQTVKLAFSVTNNVIRLKPP
SDAVSPLEQALTQHGGHGNNLIVVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACL
GNDAAAIRDAFLTRLQSKTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGKEGSKE
FLLGEWSCLHVVLDLIDSKQQGKYWCPPLLHRAALAFLLALWQDRRDSAISVLRTKERFW
ENLTTPLFATLTPPSDTTEPCVLETCAFVMKIMALEIYYVVSGSLEPSLKDALQKFSSAR
RYEYWSQYVKSLVCRVAESEEESICYLSETQMLISAWRMLLILSTSHADVMLLTEDATKL
KLFMDVLDGTKAALTTPMSVPCLRLGSMMATLLLILLKHWKNVVAAAPDILSPLSLILES
VLQADQQMMERTKAKIFSALISVLQIQGLNGGDISQLPQLLLCVCETVKDEALALIDNTR
HMSQLGDMLEDEDSMEMDSPRGPKDHRDGVCVLALHLAKELCRTDEDGEHWVSVMRKVPV
LPSVMSAMELSLRSKHNLYFTEAALHLLLTLARTPQGAAAVAGAGVTETICLPLLSVYEG
PSNGASQSFSRKSQDVACWPGVYRLCMSLMESLLKTLRYHFINEALDFVGVHQERILQCL
NSMRTVQSLACLDEADHTVGFLLQLSSFCKEWQFHLPKLLLDVQINLCYLCQTCTYLLHS
KKMLHHYLQAKNGEALPPGPLSRTQRPPQTQATAGAAGAEEAEQKALLTVQCSLLKILSK
TLAALQHFTPDCCQILLDQCMDLAEYRTLFVLSFTTPAFDPDVAPSFGTLLATINVALSM
LSEMEKKKETASVSIASLASSEELQALKSLLMFTMENCFYVLISQAVRCLKDPSILPRDK
QRLKQELSSELSTLLSSLSRHFRRGSPSSPASAQSKQPPPGSKGSHEGQEPIIQLVQAFV
RLVQR
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtgaagatggcggactctcagatcagcgtcaggagctgtcgagaactgtgg
accattctgcttggcagatccgctttgagagaaccggcgcaaatagaagcagaacttgaa
agacactgggatagactccatcaaggactcagttactacaagcaacccagctcaagctct
gcagggaaggttaaggaaaacaaaaatgtcccacagccgctgaaagactttggtttaagg
atcagtaaactgttgaaccttgacgaggagcagagcgtacagcttttacaatgttatctt
caggaggactacagagggaccagagactccctaaaggttgtcctaaaagacgatcgacag
agtcaggcgttactgctaaagattgctgattactactatgaagagcggatgtgtttgctc
cgctgtgttcttctgctgctcacatactttcaggacgagcgacatccctatcgggctgag
tacagtaactgtgtcaacaaactggagaaggacttggtaggcaactgccagtcacagttt
gaggctttgttcaaagctgaagcaccaacctgggaaactcatggaaacctgatgacggaa
agacaggtgtcacgatggttcctgcgctgcctgaaagaacagtctctgctgctggagata
atctttctgcaccacgcgtacttcgagatgagtccttctgatcttctgagttttaccaaa
atgttcaaagaacaaggctttggtttgagacaaaccaacagacacctggtggataagagc
atggatgcacttgttgaccggattgggtatttaagctgcctcatcctggttgaaggaatg
gacgtagacttcctgcacaagtgtgctctggaggattgtactcagcagcaccagttctcc
agtgcacccaacatcattaaggaaatggatcagcttctgctgacgtttggtgacatccct
catcacgggcctgtgctgttagcctgggtcctgctaagacacacgctgaggccggacgag
tccagccccgtggtcaggaggatcggccacacagccctgcagctggaggtgttcaagtac
ctgtccagcatgctgaaaggcctcggagtcttggggaataattgtacagcaagtacagca
aggatgtgcatctacggcctcctgtcatttgttatcacttcatttgaggaggaaagctta
cagattgatggcgtgtcaactcagtcctcccagctgattgatgctgcctgtgaggttctt
tctgctcccagtctggcagaggtcttttgggaaatgaagccaaacatgggacttgggatg
gttctggacagtgcagcagggatgtttccccataaaataggacctctgcttcagctgctg
actgcacttgtgtcaaacaaatcaactgtaaagaaggtgtataactttttagacaagatg
tccttctacacgcaagtttacaagcacaaacccaacgatatcgtctctaatgatgaagaa
acgctttggaggagacagacccccaaactcctctatccactaggctcaggctcaggacag
actaacctgtggatgccacagggagtgctgggccaggtgatgattgcaggtgaacagggc
ttcatggtgcgctgggattactcgtacagctcctggactctcttcacctgtgaggtggaa
atgctgctgcatgttgtttcaaccgcagacgtcatagctcactgcgtgcgcgttaaaccc
atcctggatctggtccataagatcatcagcacagactggactgtgtccgactgtctcctg
cccctcacgtcccgcatctacatgctgctgcagaggctcacgtcggtcatcaaccctccg
gtggatgtgatagcatcctgtgtgaactgtctctctgtactggctgcaaggatgccaggg
aaggtctggtccagcctccaccacactggtttcctcccgtttgcttcaaaccctttgagt
accatggctcagtgtgtgagtgctgagggaatgaaagcggctaactatggcaacctactg
gtccagaatgagcagcccaggggagagtatgccgtgacaattgcctttcttcggcttctt
accaccttggttaagggtcagcttggaagcacccaaaacaaaggtctgatcccctgtgtg
ctgctggtgttaaaggagatgctgcccacctaccacaagtggcgttacaacacctacgga
gtccgagagagaataggttgtcttatgttggagctgatccatgccatcctcaatctgagt
ccagacggggaggaccaaggcagcactcccaccctgcagtctctctgcatctactgtctg
accaacacagaagcggggcaggccgttgttaacatcatgggagttggcgtggacaccatc
gaggtggtcctggctgcacagcccagcagctatggttctgaaggtccgggtcagatcctg
atccagacagtcaaactggccttctcggtcacaaacaacgtgatccgtctgaagccaccg
tctgatgcggtgtcccccctggagcaggcgctaacgcagcacggcggtcatggcaacaac
ctgatagttgttctcgccaaatatatttaccacaagcacgatccagctcttcctcgcctc
gcaattcaactcctgaaaaggcttgccactgtcgctcccatgtcagtctacgcttgcctt
ggcaacgatgccgcagcaatcagggatgcgttcctcactcgactgcaaagcaagaccgaa
gacatgaggatcaaggtcatgattctggagtttctcacggttgctgtggaaacgcagcct
ggcctcattgagctcttcctcaacctggaagtaaaagatggaaaagaaggctcaaaggag
ttcttgctgggtgagtggagctgtcttcatgtggtgctggatctgatcgactccaaacag
caggggaagtattggtgccccccgctgctccaccgagcagccctcgccttcctcctggct
ctgtggcaggatcgcagagacagcgccatctctgtgttgaggaccaaagaacgattttgg
gaaaatttaacgacgcctctgtttgcgaccctcacccctccgtcagacaccactgagccc
tgcgttttagagacctgcgccttcgtcatgaagatcatggctctggagatttactacgtc
gtcagcggctccttggagccatctctgaaagacgcccttcagaagttctccagcgcgcgg
cggtacgagtactggtcccagtatgtgaagtccctggtgtgccgtgtggcagagtcggag
gaggagagcatctgttacctctccgagactcagatgctgatctctgcgtggaggatgctg
ctcatcctctccaccagccacgctgatgtgatgctgctaacagaggacgcaaccaagctg
aagcttttcatggatgtcctggatggaactaaagctgctctgaccactcccatgtccgta
ccctgtctccgacttggatccatgatggctacgctgctcctcatcctcctcaaacactgg
aagaacgtggtggcagcagctccggacatcttgtctcccctctccctcatccttgagagc
gtcctgcaggctgaccagcagatgatggagagaaccaaagccaagatcttttctgctctc
atctctgtgctgcagattcagggactcaatgggggagacatttcccagctgcctcagctg
ctgctgtgcgtgtgcgagacggtgaaagacgaggcgctggcgctcatcgacaacacccgc
cacatgagtcagttaggggacatgctggaggacgaggacagcatggagatggactctcct
cggggaccaaaggaccacagagacggggtctgcgtactcgcactccatctggcaaaggag
ctgtgccgcacagatgaggatggtgagcactgggtctcggtaatgaggaaggtgccggtc
ctgccctcagttatgagcgccatggagctcagcctgcgctccaaacacaacctgtacttc
accgaagctgctctgcatctgctgcttacactggctcgcactcctcagggagcagcggct
gtagcaggagccggagttactgagaccatctgtcttcctcttctcagtgtttatgaaggt
ccatcaaatggagcctctcagagcttctccaggaagtcgcaggatgtggcctgttggccg
ggcgtttaccgcctctgcatgtctttgatggagagtcttctcaagacgctgcgctaccac
ttcattaatgaagccctggactttgttggagttcatcaagagcgcatcttacagtgtctg
aactccatgcgcaccgttcagagcctggcctgcttggacgaggcggatcacacggttggt
ttcctcctccaactgtccagtttctgtaaggagtggcagtttcacctccccaagctgctc
ctggacgtgcagatcaacctgtgttacctgtgccagacctgcacatatctgctccacagc
aagaagatgctccatcactacctgcaggccaagaatggtgaggcgttgcctcctggtccc
ctctccaggacccagcgcccccctcagactcaggcaacagcaggggcagcgggggcagag
gaagccgagcagaaggccctgctgaccgtgcagtgcagccttttgaagatcctcagcaaa
accctggctgctctgcagcacttcactcccgactgctgccagatcctcctggaccagtgc
atggacctggccgagtaccggaccctgtttgtgctcagcttcacgactccggcctttgac
cccgatgtggcgccttcatttgggaccctgctggctacgatcaacgtggcgctcagcatg
ctgagcgagatggagaagaagaaggagacggcttcggtcagcatagcatcgctggcttca
tccgaagagctccaagctctgaagtcactgctgatgttcaccatggagaactgcttctac
gtgctcatctctcaggctgtccggtgtctcaaagacccctccatcctcccgcgggacaaa
cagaggctcaagcaggagctcagctcagaactgagcacgcttctctccagcctgtcccgt
cacttccggaggggttctccgtcgtctccggcctccgcccaatccaaacaacccccaccc
ggatccaagggaagccacgaaggccaggagcccatcatccagctggttcaggcttttgtg
cgtctcgtgcagagatag
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integrated database retrieval system
