Oryzias latipes (Japanese medaka): 101158982
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Entry
101158982 CDS
T02443
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101158982 (ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101158982 (ddx3x)
03041 Spliceosome [BR:
ola03041
]
101158982 (ddx3x)
03036 Chromosome and associated proteins [BR:
ola03036
]
101158982 (ddx3x)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101158982 (ddx3x)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101158982 (ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
101158982 (ddx3x)
Spliceosome [BR:
ola03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101158982 (ddx3x)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101158982 (ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101158982
NCBI-ProteinID:
XP_011487776
UniProt:
A0A3B3H7V9
LinkDB
All DBs
Position
21:12130641..12142825
Genome browser
AA seq
730 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAPRNAGNAYSTGRQCG
YSVAPVNFCYPGLASQELAFYHAYSDAPGWDGGRTNGFVNGYHDNRANGGFGGRGSSRND
RAFGGYENKEGSWGGASRDSYNSFGGRNDRTKSSFFNDRGAGSRGRYERGGFSGGGSSRW
GEDTREDDWSKPTAPNERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIESFHDVDM
GEIVMGNIALTRYDRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSDGP
GDALQAAKNNGQDNGRYGRRKQYPLSLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGG
ADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRR
IVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVE
DNDKRSFLLDLLNATVIPSEVQESITESTEKIGKDSLTLVFVETKKGADALEDFLYREGY
ACTSIHGDRSQRDREEALHQFRSGHCPILVATAVAARGLDISNVKHVINFDLPSDIEEYV
HRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSTRG
RKRFSGGFGARDYRQTSGGSGGFSSNRTGRGAGGHGGNRGFGGGFGGNFYNNDGYGGNYS
HAGSVDWWGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttaaactcagctgacggacaaggcggcggaactggcaggcgttacattccacctcattta
aggaacaaagatgctcccagaaacgcaggaaatgcttattccactggtagacagtgcggt
tattcagtggcaccagtaaatttctgttacccaggactggcctctcaggagcttgccttt
taccatgcctacagtgatgcaccaggatgggatgggggacgcaccaatggatttgtgaat
ggttaccatgacaaccgtgcaaacgggggctttggtggacgtggatcctctcgcaatgat
agagcttttggtggttatgagaacaaggaggggagctggggaggagcatccagggattcc
tacaacagctttggaggacgcaatgaccggaccaagtcatccttcttcaatgacagaggg
gcgggctcaagaggaagatatgagcgtgggggcttcagtgggggaggaagtagccgctgg
ggggaagacactagagaagatgactggtccaagcctactgctcccaatgagcgtttggaa
caggaacttttctctggaggcaatactggaataaactttgagaaatacgatgatattcct
gtggaggctactggatccaactgcccaccccacattgagagtttccatgatgtggacatg
ggggagatcgtcatggggaacatagcattgacccgttacgatcggcccaccccagttcag
aagtacgccatcccaatcatcaaaaccaagagagatttgatggcctgcgctcagaccggt
tcgggaaagacggctgctttcttgttgccggtgctgagtcagatctacagtgacgggcca
ggcgatgctctgcaagctgcaaagaacaacggacaggacaatggccgatatggacgtcgt
aaacagtacccactttccctcgttctggctccaaccagagaactggctttgcagatctat
gacgaggcgaggaagtttgcttaccggtctcgtgtgcgtccttgcgtggtttatggcggt
gctgacattgggcagcagatcagggaattggagaggggctgccacctgctagtggccaca
cctggacgtttggttgacatgatggaaagaggcaagatcggcctggactattgcaactac
cttgttctggatgaggccgatcgcatgttggacatgggttttgagccacaaatcagacgt
attgtggagcaggataccatgccacctaaaggcatccgacagaccatgatgttcagcgcc
actttccccaaagagatccagattctggctcgtgacttcctggaggattacatttttctg
gcggtgggtcgtgttggttccacttcagaaaacataacccagaaggtggtttgggtggag
gacaacgacaagcgctcatttctccttgatctgctcaatgctacagttattccaagtgag
gttcaggaaagtatcacagagtctacagagaaaataggcaaagactcgttgactctggtc
tttgtggagacaaagaaaggagctgatgctctggaggacttcctttaccgtgaaggttac
gcctgcaccagcatccatggcgatcgatcacagcgtgacagagaagaggctctgcatcag
ttccgctctggacactgtcccatcctagtggctacagctgtggctgctcgaggtctggat
ataagcaacgtgaaacatgtcatcaactttgacctgcccagtgacattgaggaatacgtt
caccgtattggccgtacgggacgtgtgggcaaccttggtctggccacgtcgttcttcaac
gacaaaaacagcaacataaccaaagatttgctggatatcttggtcgaggccaagcaggag
gttccctcctggcttgaaagcttggcctatgagcaccagcacaagagcagcacccgaggc
cggaagaggttctctggtggatttggagccagagattaccgtcagacatctggtggctct
ggaggcttcagcagcaaccgtacagggcgcggcgctggaggtcatggagggaaccgtggc
tttggaggtggctttggtggaaacttctacaacaatgatggctatggaggaaactacagc
cacgccggtagtgtggattggtgggggaactag
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