KEGG   Oryzias latipes (Japanese medaka): 101159161
Entry
101159161         CDS       T02443                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101159161 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ola03021]
    101159161 (taf5l)
   03036 Chromosome and associated proteins [BR:ola03036]
    101159161 (taf5l)
Transcription machinery [BR:ola03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     101159161 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     101159161 (taf5l)
Chromosome and associated proteins [BR:ola03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     101159161 (taf5l)
    STAGA complex
     101159161 (taf5l)
    TFTC complex
     101159161 (taf5l)
    SAGA complex
     101159161 (taf5l)
    SLIK complex
     101159161 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 TFIID_NTD2 EIF3I Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st RMC1_N Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR19_1st PEP5_VPS11_N Nbas_N PROPPIN Beta-prop_IP5PC_F WD_LRWD1 DUF7165
Other DBs
NCBI-GeneID: 101159161
NCBI-ProteinID: XP_004085097
LinkDB
Position
1:2096054..2101854
AA seq 600 aa
MKRVRTEQIQYAVTQYLKRRQYVDTDGSLKGAKLSQSPEEMAASLTVKTESGCGNVVSAA
PCQSDPQQYEAQFSRLHSFLSETEISWAREVSGILYPLFVYLHLDMVRCGLKGAVDGFYT
RFHEAFLQDGEQRAVIEQLRHVLTAQDVAANPKLRAFLEHKYTVHLTEPAYNYLLRYLQS
EDNSALCRVFSTHLQVDVAALRRTDYQLYGAAGGSATAPNSTTSWAGVDGGEAADGVEVP
VGIPQSEAALEALQDCIKKVREGPPTLTTICFYAFHHTEQMLNTAEVSPDSRLLSAGFDH
SAVKLWSLRARKLKATPHQVDVSRIHLACDVLEEDRDDENGCGSEIKTLRGHSGPVYRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHAYPVWDVDVSPCSLYFGSCSQDRTAR
LWTFSRTYPLRIYAGHLSDVDCIKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRSSHSGTPADGSSSELVGLYSGNTNNVLNNQFMACNLLLVTGTAQEKTEQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagagggtccggactgagcagatccagtacgctgtgacccagtacctgaagaggcgg
cagtatgtggacaccgacggctctttgaaaggagccaaactgtctcagtctccagaggag
atggctgccagcctgacagtgaaaacagagtctggctgtgggaacgtggtctctgcagct
ccctgccagtctgacccacagcagtatgaggcgcagttctctaggctgcactcctttcta
tcagaaacagaaatatcttgggctcgggaggtgagcggcatcctctatccgctctttgtt
tacctccacttggatatggtgcggtgtggcctgaagggggcggtagacgggttttacact
cgattccatgaagcctttcttcaggacggcgagcagcgcgccgtcatcgagcagctccgc
catgttctcactgctcaggacgttgcagccaaccccaaactccgagctttcctggagcac
aagtatactgttcacctgacagagccggcctacaactacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagggtgtttagcacacacctgcaggtggatgtggcagca
ttgagacgcacagactatcagctttatggagcagctgggggctcagctacggcgccaaac
tccaccacatcgtgggcgggggtggatggaggagaggctgcagacggggtggaggtccct
gtggggatcccacagagcgaagcggccttggaggctctgcaggactgcatcaagaaagtc
cgcgaaggcccgcccactctcaccaccatctgtttctacgccttccaccacacggagcag
atgctgaacacagcagaggtgtcgccggacagccggctgctgtccgcgggctttgatcac
tccgccgtcaaactgtggagcctcagagcgaggaagctgaaggccacgccgcatcaggtg
gacgtgtcgcgcatccacctggcatgtgacgtgctggaggaggacagggatgacgaaaac
ggctgtggaagtgagataaagacgctgaggggtcacagcggtccagtgtaccggaccgcc
ttcctgaccgacagctccggcctgctctcgtgctccgaggacaccaccatccgatactgg
gacctgggcagcttcaccaacaccgtactgtaccagggccacgcctacccggtgtgggac
gtggacgtgagcccctgcagcctttactttggcagctgctctcaggaccgcaccgcacgc
ctgtggacgttttctcgcacgtaccctctgcggatctacgccgggcacctctctgacgtg
gactgcattaaattccacccaaactccaactacctggccacgggctccacggacaagacg
gtccggctgtggagcacccagcagggggcgtccgtgcgcctgttcaccggccaccgcggc
cctgtgctgtcgctggcgttctcccccaatgggaagtacctggcgtccgccggcgaagac
cagcgcgtgaagctgtgggacttggcgtcggggactctgttcaaagacctgcgcggacac
acggacagcgtcaccagcctgtccttcagcccggacagcagcctggtggcttcctcctcc
atggacaactccgtccgggtgtgggacatccgcagctcgcacagcgggacgccggccgac
ggctcctccagcgaactggtggggctctacagcggaaacaccaacaacgtgctcaacaac
cagttcatggcctgcaacctcctgctggtgaccggaacggctcaggagaagacggagcag
tga

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