Oryzias latipes (Japanese medaka): 101159399
Help
Entry
101159399 CDS
T02443
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ola03009
]
101159399 (utp20)
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101159399 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
101159399
NCBI-ProteinID:
XP_023808054
LinkDB
All DBs
Position
23:1698074..1736749
Genome browser
AA seq
2778 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLAQVNIDVIHRIDRTGSYSEEVETYFSEGLTKWRDL
NLSEHFTAFLKEVSNKSQSFNLLVFHQKSVVESLKTHLAVRNSLAFQPLLDLVVQLARDL
QTDFYPHFPEFFTLITGLLETKDTELLEWAFTCLSYLYKYLWRLMVKDMTNLYSLYSTLL
AHKKEHIRNFAAESFSFLMRKVPDLDALLTHMFSDLEQHPEKVEGTGQLLFEMCKGVCHM
FHSCAATALPAVLRKLGPITSPGAPLPLDAVRDAVDHMAQAAAGHVHREHFLVLWESLQT
SVEDVSAVLEAKPEDTKLAMEQLERLLFVLHTLVSHKGGAKVTQPESVCQMVLRLIQSAS
LGTSCSRLLLQITSSLLLGENVTLQPGVVAEMIQKVFSSSVGQDLILEFTKEMLTMNQFE
QLFLPSLLRYTAALFGHGDAPSRHGGLEALVHLILTKAPPPTDGALAFETYPLLFSVATT
EAPPGEQLSVPQQVLALIPEEQSGATSDLSLPWAALVLLPHLRPLPAAQVVPAVAAFLNR
LLDQIQADGLGKAGLFVARQALSCLLSLDGSAHILSLLRADAVNSVLRKFPSDASALLLG
DLYYTRLSLCGVSEHLSHNALLELYQLLHANFSSNVSKIRLLTLRIFCQFEAELPAQVEG
EESAEVQPVFAVCMQAELVPASVQDYRDKLLHLRKLRHDLVQRSLPNGPPGTFQQVPLRY
LIAMLFVNFRPLWDAVIELIVSHARGMGSKDFWEIFHEHLEMVAGLAEKELRDEEEEEEE
DERGREGPGCDVIESGEVGVLFLEQLKLNSDPYDRTDFPNFRGLLWRAMAQFPDRVEARS
RELSPLLLRFIRNEFYPADLLVAPTQDLRKLQDAAVEESDKEEELEEEVEEETKRPRKAL
PRRAAAKQLITHLKVFAKFTNPRALYLESSLSDLYHQLLCHQDQQIQRAALECLFTYKDP
NVLPYKENLERLLDDKHFKEEIVHFNISEETGVVEAPHRGKLIPVLMRILFGRLRSKAGS
RFQGKSSAGVRSSIILRFLAGCQAEELGMFVDLLLEPVQHHSRGSCLEAVQRAASDADPA
AVLPLGRQHSLLNVLDVVIHKLGHLIHAHLPKVLQVLLCVTASVSAVLDNREQLRPGCIS
PLKNLRRLGVLKIQDFFDGFDSYDFSSVEIDAVFQAVVWPQVCRLPTESPYSPTPLLKLV
HVWCKNARYFPLLAKQKLDQPECDVLLNVFALLSAKNASPATIAMVMDIAESLATTEDFV
HSETERALNVDGCVFPQPEEGAALSADSLSQGCRLLLPHISTLLHYFSTVVCNADRLRKK
KFRAQVSKELNILSKISRFVSDKEQSSLLVRLLLPFLLKGHNAQETEIDILATIQNLLRR
CERPSAFLRPLSRLFAVVHNKLPRKALTAVFQTLSDLDPSLSYITDMTAKLNAFDSRHLD
EIYFDVRLTAFQDATRRVRDLQTLDLDFISTVVYNCFHTYEIGDMSLADNATLCLSTVIG
RLAAVGPGEQIYRDLIQHTILDAVLKGLRSKTESVQHEYTSILACLVKNFPSRKEFRDLV
QLTDYNDPESDFFEHMKHIQIHRRGRALRKLAKQLTDGTVALTPRSLQNYIMPYAMTALL
DEKMLKHENMTSASVEVVGAVCRQLTWSKYLYYLKHFIHILQTGQAEQKLAVSLLVAVLQ
SFHFDHQTLSREMEAAKAREEGIAEEEEEEAADEADGSDEEEAMETDGKTADVPMETDAT
EGGGGPSEAKAKAEGKGGRRAPPSGLPHSREELEALVAAIHQTVNDSVLPRLHKCLTAKV
QRDQEHKAVKSKDVKEEEVARVPIAFAMVKLMQTLPPHIMEANLPGILIKVCVLLRNRFQ
EIRDVARGTLVRIVETLGCRFLHYLLKEMQAVLVKGYQVHVLTFTVFQLLSVLSPTLKAG
DLDPCMNMLIDVFNNELFGSVAEEKEVKGIVSKLMEARHSKSMDSYQLLARFCSRDSITK
LLLPLKEILETTSSLKVCNRVTAVLRRLVLGLLVNDGMTSQDLLLLSHGLISQSLPLLTK
RDREKASTKPPPDPRLPPPSCLLLPPTPKRGGVKAPVSSRTNMHILVDAGLKLLHLSLKK
SKVTSSEASALEMLDPFVLLLLECIDSMHVKVITEALTAFTWLLRFPLPAVEQNAGQLTK
QLFVLLKDYSKAGAARGENYLLVQNCFKAVTILVKNVKSNKISETQLQVLLGYAEEDIYD
QSRQATAFGLLKAILSRKLVVPEMEDVMKKVATLSVTGANGMIRVHCRQIYLRYLLDYPL
GKKLKKHLDFVVAQLQYDHDTGRESALEMLAYVCQTFPQNILFNHCSLFFVPLALVVVND
DSANCKKMAAMAIKTLLTHLDLNHQNTLFSFVTTWLNSEKTSLRRLGAQICGLYVEVERE
AFSCRLAELLPLLEKEIHPDNYEDIEDEQDERGADRLLFSSLTLLAKLCKHAGLLELSKP
PETLCRIWGHMEAHLRHPHCWVWLTASQIFGQLFAAQPAEKLVAAWRGGGGGASSTATDF
ITSSLDKKMRELALAFCHQLQSKFLDTSSGEQVIKNLLYVGKVIYLISSESDVQDQEQDG
PEVGNGDEEDEEKEGEKEEEEEEDRDNKPPSLLWLMKKLSLMAKREAAHSPKVPLKRSCV
FKFLGAMAIDLGKERLGPYLTTILAPLYRELDSTYAEQDPTLKNLAQELIELLKKQVGLE
AFSMAFSAVQREFAQRRAARKRHRAVQAVSNPDIAAKKKLKKHKNKIEAKKRKIEFLRPG
YKAKKQRSHALKDLAMVQ
NT seq
8337 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaatccaagtcttcgtaccacaaatctgagaacaccttcaggtttctcact
tttgctgaaagactcgcccaggtcaacatcgacgtcatccatcgtatcgaccgaaccgga
tcgtactcagaggaagtagaaacctacttttcggaagggctgacgaaatggagagacctc
aacctgtcggagcatttcactgccttcctgaaagaagtgtccaacaagagccagtccttc
aacctgctggttttccaccagaagtccgtcgtggagagcctgaagactcacctggcggtc
agaaacagtttggcgttccagcccctgctggacctggtggtgcagctggccagagacctg
cagacggacttctacccgcatttcccagagttcttcactctcatcaccggtctcctggaa
accaaagacacagagctgctggagtgggccttcacctgcctgtcctacctgtacaagtac
ctgtggaggctcatggtgaaggacatgaccaacctctacagtttgtacagcacactgctg
gcgcacaagaaggagcacatccgcaactttgccgctgagagcttctcctttttgatgaga
aaggtcccagatctggacgccttgctgactcacatgttctccgatctggagcagcacccg
gaaaaggtggaggggacgggccagctgctgttcgagatgtgcaaaggcgtctgccacatg
ttccactcctgcgctgccaccgccctccccgcggttctgcggaagctgggccccataacc
agccccggggcccccctgccgttggatgccgtgcgggatgctgtagatcacatggctcag
gccgctgccggtcacgttcacagagagcacttcctggttttgtgggaatccctgcagacc
agtgtggaggacgtctctgccgttctggaggcgaagccagaggacaccaagctggcgatg
gagcaactggagaggctgctgtttgttcttcacaccctggtgtcccacaagggcggcgcc
aaagtcacacagccggagtcggtctgccagatggtgctgcggctgatccagagcgcctcc
ttggggacctcctgctcccgtctcctcctgcagatcacctcctcgctgctgctgggggag
aacgtgaccctgcagccgggggtcgtagcagagatgatccagaaggtgttcagcagctcc
gtggggcaggatttgatcttggagttcaccaaagagatgctgaccatgaaccagtttgaa
cagctcttcctccctagtctgctgcgttacacggctgctctgttcggccacggcgacgcc
ccgtctcgccatggcggtctggaggcgctggtccatctgatcctcaccaaagccccgccc
ccgacggatggcgccctggcttttgaaacgtacccgctcctcttcagcgtagcaaccaca
gaagcgccccctggggagcagctgagcgtaccgcagcaggtgctggcgctgatcccagag
gagcagagcggcgccacatccgacctgtcgctgccttgggccgcactggtgttgctgcct
cacctcagacctctacctgcagctcaggtggttccagctgtggccgctttcctgaaccgc
ctactggatcagatccaagcagacggactgggaaaagctggtctgtttgtggcccggcag
gctctgagctgcctcctgtctctagatggctccgcccacatcctgtccttgctccgcgcg
gacgccgtcaactcggtcttgcggaagttcccatcggacgcgtctgcgctgcttctggga
gacctctattacactcgcctctcgctttgcggcgtctccgagcatctatcccacaatgca
ctgctggagctctaccagctgctgcacgccaacttctcctccaatgtttcaaagatccgc
ctgctgactttgaggatcttctgtcagtttgaggcggagcttcctgcacaggtggaggga
gaggagagcgcggaggtgcagccggtgtttgccgtctgcatgcaggcagagctggttccg
gcttcggtgcaggactacagagacaagctgctgcacctgcgcaagctgaggcacgacctg
gtgcagcgcagcctgcccaacgggccgccgggcaccttccagcaggttcctctgcggtat
ctcatcgctatgcttttcgttaacttccggccgctttgggacgcggtcattgaactcatc
gtgagccatgctcgggggatgggcagcaaagacttctgggaaatcttccatgaacatctg
gagatggttgcaggcctggcagagaaggagctgagggacgaggaggaggaggaggaggaa
gatgagaggggaagggaggggcccggctgtgatgtcatcgaaagcggggaggtgggggtg
ctgtttctggagcagctgaagctgaactccgacccctacgaccggacggacttccccaac
ttccgcggcctcctgtggcgagccatggctcagttccccgaccgggtggaggcgcgcagc
cgcgagctgagccccctgctgctccgattcatcaggaacgagttctatcccgccgacctg
ctggtggcgcccacgcaggacctgaggaaactgcaggacgctgccgtggaggagtcggac
aaggaggaggagcttgaagaggaggtggaggaggagaccaaacgtcccagaaaggctctt
ccaagaagagctgctgcgaaacagctgattacccacctgaaggtgtttgctaagttcacc
aaccccagagctctgtacctagagtccagcctgagcgacctctaccaccagctgctctgc
catcaggaccagcagatccagcgtgcagctctggagtgtttgttcacatacaaagaccca
aacgtccttccatacaaggagaatctggagcggctgctggacgacaaacacttcaaagag
gagatcgtgcacttcaacatctctgaggagaccggagtggtggaagctcctcacagaggc
aagctgatcccggtgctgatgaggatcctgtttggccgccttcgcagtaaagctggcagc
agattccaggggaagtccagcgccggcgtccgctcctccatcatcctgcgcttcctggcg
ggttgtcaggccgaggagctgggaatgttcgtggacctgcttctagagcccgtccagcat
cacagccgaggttcctgtttggaggcagtccagagagcggcgtcggacgcggacccggcc
gcggtgctgcctctgggccgccagcacagcctgctgaacgtcctggacgtggtgatccac
aaactgggccacctgatccacgcgcacctccccaaagtgctgcaggtcctgctgtgcgtc
acggcctccgtgtccgccgtcctggacaacagggagcagctgcgccccggatgcatcagt
cctctgaagaacctgaggaggctgggggtcctgaagattcaggacttcttcgatggcttt
gattcctacgacttcagttcagtggagatcgatgcggtcttccaggcggtggtctggcct
caggtgtgtcgtctccccactgagagtccgtactcccccacacctctgctgaaactcgtc
cacgtttggtgcaaaaatgccaggtatttccccctcctggccaaacagaagctggaccag
ccagagtgcgacgtcctcctcaacgtcttcgccctcctctccgcaaagaatgcgtccccg
gctaccatcgccatggtgatggacatagccgagtctctcgccacgactgaagattttgtt
cactcggaaacggagagggcactgaatgtggatggctgcgtgttcccgcagcctgaagag
ggcgctgctctgtctgcagactccttaagtcagggctgccggctgctgctgccccacatc
tccaccctgctgcactacttcagcaccgtcgtctgcaacgccgacagactcaggaagaag
aagttccgagcgcaggtctccaaagagctcaacatcctgtccaagatcagtcggtttgtg
agcgataaggagcagagctcgctgctcgtcaggctgctgctgccgttcctcctcaaaggc
cacaacgctcaggagacagagatcgacatcctggccaccatccagaacctgctgcgtcgg
tgtgagcgtccgtccgccttcctgcggccgctcagcaggctgttcgccgtggttcacaac
aagctgccccggaaagccctcaccgccgtcttccagactctgtcagatctggatccatcg
ctgtcctacatcaccgacatgacggcaaagctcaacgcctttgacagccgccatctggac
gagatctactttgatgtgcgtttgacggccttccaggacgccacgcggcgcgtccgagac
ctgcagactctggacctggacttcatcagcaccgtcgtgtacaactgtttccacacctac
gagatcggcgacatgtctctggcggacaacgccaccctgtgcctgtccacggtgatcggc
cggctggcggcggttggacctggagagcagatttacagggatctgatccaacataccatc
ctggatgccgtcctgaaggggctccgcagcaagacggagagtgtgcagcacgagtacacc
tccatcctggcctgcctggtgaagaacttcccctccaggaaggagttcagagacctggtg
cagctcaccgactacaacgacccggagtcggatttctttgagcacatgaagcacatccag
attcaccggcggggccgcgccctcaggaagctggccaagcagctgacggacggcacggtg
gcgttgacgccgcgctccctgcagaactacatcatgccgtacgccatgaccgccctgctg
gacgagaagatgctcaagcacgagaacatgacctcggcgtccgtggaggtggtgggggcc
gtgtgccgccagctcacctggtccaagtacctgtactacctgaagcatttcatccacatc
ctgcagacggggcaagccgagcagaagctggccgtcagtctgctggtcgccgtcctccag
tctttccattttgaccatcagaccctcagcagagaaatggaagccgccaaagccagagaa
gaggggatcgctgaggaagaggaagaggaagcagcagacgaggcggatgggagcgacgag
gaggaagcaatggagacggatgggaagacggctgatgtccccatggagacggacgctaca
gaggggggcggcggcccttcagaggcaaaggccaaagctgaagggaaaggggggcggcgc
gccccgcccagcggacttcctcacagcagagaggagctggaggccctcgtcgccgccatc
caccagaccgtcaacgacagcgtgctgccgcggctgcacaagtgtctgacggcaaaggtg
cagcgggatcaggagcacaaggcggtgaagtccaaggacgtgaaggaggaagaggtggcg
cgcgtccccatcgcgttcgccatggtgaagctcatgcagacgctgccgccgcacatcatg
gaggccaacctccccgggatcctgatcaaagtgtgcgtcctgctgaggaaccgcttccag
gagatccgggacgtggcgcggggaacgctggtgaggatcgtggagactctgggctgcagg
ttcctgcactacctgctcaaggagatgcaggccgtcctggtgaaaggctaccaggtccac
gttctgacgttcaccgtgttccagctgctgtccgtcctcagtcccaccctgaaggccgga
gacctggacccctgcatgaacatgctgatcgacgttttcaacaacgagctgttcgggtcg
gtggcggaggagaaggaggtgaagggcatcgtctccaagctgatggaggcgcggcacagc
aagagcatggactcctaccagctgctggctcgcttctgcagccgggacagcatcaccaag
ctgctgctgccgctgaaggagatcctggagaccacgtccagtttgaaggtgtgtaaccgg
gtgactgccgtcctgcggcgcctggttttgggtctgctggtcaacgatgggatgacatca
caggacctcctgctgctgagccacggcctgatcagccagagcctgccgctcctcaccaag
agagaccgtgagaaagcgtcgaccaaacctccccctgaccccagactcccccctcccagc
tgcttgctcctgcctcctaccccaaaaagaggaggagtcaaagctcccgtcagcagccgc
accaacatgcacatcctggtggacgccggcctgaagctgctccacctgagtctaaagaaa
tccaaggtgacctcgtctgaggcgtcggcgctggagatgctggatccctttgtgctgctg
ctgctggagtgcatcgactccatgcatgtcaaggtgatcacagaggctctgacggcgttc
acctggctgctgaggttccctctgccggcggtggagcagaacgccggacagctgaccaag
cagctcttcgtcctgctgaaggattactccaaagccggagcggcccgaggcgagaactac
ctcctggtccagaactgtttcaaggccgtgactattttggtcaaaaacgtcaaaagcaac
aagatttctgaaacgcagctgcaggtgctgctgggatacgccgaggaggacatctacgac
cagtcccgccaggccaccgccttcggtctgcttaaggccatcctgtccaggaagctggtg
gtgccggagatggaggacgtcatgaagaaggtggccacgctgtccgtcacgggcgccaac
ggcatgatcagggttcactgtcgacagatttacctgaggtacctgctggactatcctctg
gggaagaagctgaagaagcacctggactttgtggtggcgcagctgcagtacgaccacgac
acgggccgggagtcggcgctggagatgctggcctacgtctgccagacgttcccccagaac
atactcttcaatcactgcagtctcttcttcgtccctctggccctcgtcgtcgtcaacgac
gactctgcaaactgcaaaaagatggctgccatggctattaagaccctgcttactcatctg
gacctgaaccaccagaacaccttgttctccttcgtcaccacctggctgaactcagagaag
accagcctgcggcgcctcggggctcagatctgcggtctgtacgtggaggtggagcgggag
gccttctcctgccggctggccgagctgctcccgctgctggagaaggagatccaccccgac
aactacgaggacatcgaggacgagcaggacgagaggggagcggaccgcctcctgttcagc
agcctgacgctcctcgccaaactctgcaagcacgccggcctgctggagctcagcaagccg
ccggagacgctctgccgcatctggggtcacatggaggcccacctgcggcaccctcactgc
tgggtgtggctgaccgcctcgcagatcttcggacagctctttgcagctcagccggcggag
aagctggtcgccgcgtggagaggaggaggaggaggagcctcgtcgacagcgactgacttc
atcaccagcagcctggacaaaaagatgagggagttggcgttggcgttctgccatcagctg
cagtccaagttcctggacacgtcctcaggagagcaggtgatcaagaacctcctctacgtc
ggaaaggtgatttacctcatctcctccgagtcggatgtccaggaccaagagcaggacggg
ccggaggtcgggaacggtgatgaagaagatgaggagaaggaaggagaaaaggaggaagag
gaggaggaggacagagacaacaagcctccgtctctgctctggctgatgaagaagctgtct
ctgatggcgaagagggaggcggcgcactcccctaaagttcctctgaagagaagctgcgtc
tttaagttcctgggagcgatggccatcgatctggggaaggagcggcttggaccgtatctg
accaccatcctggctcctctgtaccgagagctggacagcacgtacgccgagcaagacccc
accctgaagaatctggcgcaggagctgatagagctgctgaagaagcaggtggggctggag
gccttctccatggccttctccgccgtccagagggagttcgctcagcggcgagcggcacgc
aaacgccacagagccgtgcaggcggtttccaaccccgacatcgccgccaagaagaaactt
aagaagcacaagaacaaaatcgaagcaaaaaagcgcaaaatcgagttcctgcggcccgga
tataaagccaagaagcagcgcagccacgccctcaaagacctcgccatggtgcagtga
DBGET
integrated database retrieval system
