Oryzias latipes (Japanese medaka): 101159486
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Entry
101159486 CDS
T02443
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101159486 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101159486 (sf3b1)
03036 Chromosome and associated proteins [BR:
ola03036
]
101159486 (sf3b1)
Spliceosome [BR:
ola03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101159486 (sf3b1)
Complex B
101159486 (sf3b1)
Complex C
U2 SnRNP specific factors
101159486 (sf3b1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101159486 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
101159486
NCBI-ProteinID:
XP_004085416
UniProt:
H2N0Z3
A0A3P9JXY9
LinkDB
All DBs
Position
21:complement(172041..184678)
Genome browser
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLKEDAGQGVGLDSTGFYDQEIYGGSDGRFVGYVTSI
AANEQEDDDEDDTSTSLLGQKKPGYHAPVAMLNSIPQSDEHYDPFAEHRAPKIADREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKVVNGSAASQASTKRKRRWDQTADQTPSNSTPKKVSSWDQADAGAETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDLTPASQMGSST
PLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAQYPQVYNDDKNVYVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatattgaggcgcagatcctggagatccagggg
atgaaggcctccctgaaagaggatgcaggtcagggagtgggcctggactccactggcttt
tacgaccaggagatctatggaggcagcgacggtcgttttgtgggatatgtcacttccatt
gcagccaatgagcaggaagatgatgatgaagatgacacatcgacaagtttgttgggacag
aagaagccaggctaccatgcaccagtggcaatgctcaactccattccccagtcagatgaa
cattacgacccattcgcagagcatcgcgcgccgaaaatcgcagatcgggaagatgaatac
aaagctcgtcgcagacagatgatcatttcgcctgagcgccttgacccctttgcagacggg
ggcaaaacgccagaccccaagctgcaggtgaggtcgtacgtagacgtcatgttggagcag
aacctgtccaaagaggagagggagatccgtcagcagctggcagagaaggcaaagtcgggg
gacctgaaagtggtcaacgggtctgctgcctcccaggccagcacaaagcgaaagcgccgc
tgggaccagacagccgaccagaccccttccaattccacacccaagaaggtgtccagctgg
gaccaggctgatgccggtgctgagactccaggacacactcctgctcacacaccgtcaaac
agccgctgggatgaaactcctggtcgtcctaaaggcagcgagaccccgggggccaccccc
agctcacggatgtgggaccccacccctagccacacccccgctggagctgccacccctggt
agggacacgcctggccacgccacccctggccacggaggggccactgggagcgttcggaag
aaccgctgggacgaaacccccaagacggagagagagaccccgggtcacgggagcggctgg
gcggaaaccccccgaacagacagaggagaagagtctgtgggggagacgccgaccccagga
gccagcaagaggaagtcccggtgggatctaactccagccagtcagatggggtcctctact
cctctcctgacccctggaaaaaccccgttaggaacgccagccatgaacatggcaacgcca
accccaggacacctgatgagcatgacccccgagcagctgcaggcgtggaggtgggagaga
gaaatcgatgagaggaaccggcctctcacagacgaggagctggacgccatgtttcccgag
ggctacaaggtgttgccccccccagcagggtatgtgccaatccgcactccggctcggaag
ctgtcggccacgcccacccccatcggcgggatgacgggctttcacatgcaggtggaggac
cgcaccaccaaacagatgaacgaccagccctcggggaacctgcccttcctcaaacccgat
gacatccaatactttgacaaactcctggtggaggtggacgagtcgacgctgagccccgaa
gagcagaaggaaaggaagatcatgaagctgctgctgaagatcaaaaacggaactccgccc
atgagaaaggcggctctgcgtcagatcacagacaaagctcgggaatttggagcagggcca
ctctttaaccagattctgccgctgctcatgtcccccacactggaggaccaggagcgccac
ctgctggtcaaagtcatcgatcgcatcctgtacaagctggacgacctggtgcggccgtac
gttcataagatcctggtggtgatcgagcccctgctcatcgatgaagattactacgccaga
gtggaagggcgagagatcatctccaacctggcaaaggctgcaggtttggccacaatgatc
tccaccatgagacctgacatcgacaacatggacgagtacgtgagaaacaccacggcccga
gccttcgccgtggtggcctcagcactggggatcccctccctcctgcccttcctcaaagct
gtctgcaaaagcaagaagtcctggcaggcccggcacaccggcatcaagatcgtgcagcag
atcgccattctcatgggctgcgccatcctgcctcacctgcgcagcctggtggagatcatc
gagcacggtctggtggacgagcagcagaaggtgaggaccatcagtgccctggctattgct
gccctcgctgaagccgccaccccctatgggattgagtccttcgactcggtgctgaagccg
ctgtggaagggcatcaggcagcacagaggaaagggtctggccgcgttcctcaaagccatc
gggtatctgatcccgctgatggatgcggagtatgccaactactacaccagagaggtgatg
ctgatcctcatcagggagttccagtcccccgatgaggaaatgaagaagatcgtactgaag
gtggtgaagcagtgctgtggcacggacggcgtggaagcaaattacatcaagaccgagatt
ttgccgccgttcttcaagcacttctggcagcacaggatggctctggacagacgcaactac
agacagctggtggacaccaccgtggagctggccaacaaagtgggggcggcagagatcatc
tcgcgcatcgtggatgatctgaaggacgaggcggagcagtacaggaagatggtgatggag
accatcgagaagatcatggggaacctgggggcagctgacatcgaccacaagctggaggag
cagctgatcgatggcatcctgtacgccttccaggagcagaccacagaggactctgtgatg
ctgaacggttttggcacggtggtgaacgcgctgggcaaacgcgtgaaaccgtacctgcct
cagatctgcggtacagtgctgtggcgcctcaacaacaagtccgccaaagtgcgtcagcag
gcggcggacctgatctcacgcacagcggtggtcatgaagacctgtcaggaggagaagctg
atgggccatctgggggtggtgctgtacgagtacctgggagaggagtaccccgaggttctg
ggcagtatcctgggcgcactcaaggccatcgtaaacgtcattggaatgcacaagatgacc
cctcctatcaaagacctgcttcctcgcttgacccccatcctgaagaaccggcatgagaag
gtccaggagaactgcatcgacctggtgggccggatcgctgacaggggggccgagtacgtg
tctgccagggagtggatgaggatctgctttgagctgctggagctcctcaaggctcacaaa
aaggccatccgcagagccacagtcaacaccttcggttacatcgccaaagccatcggccct
cacgacgttctggccacactgctcaacaacctgaaggtccaggagcggcagaaccgggtc
tgcaccaccgtggccattgccatcgtggcagagacgtgttcgcctttcaccgtgctgccg
gcgctcatgaacgagtaccgagtccccgagctgaacgtgcagaacggcgtcctcaaatct
ctctccttcctgtttgagtacatcggagagatgggcaaagactacatctacgccgtcacg
ccgctgctggaggacgcgctgatggacagggacctggtccacagacagacggccagcgcg
gtggtgcagcacatgtctctgggcgtgtacggctttggctgcgaggactccctcaaccac
ctgctgaattatgtgtggcccaacgtctttgagacctcgccacatgtcatccaggcggtg
atgggggccctggagggtctccgggtggccctcggcccctgtcgcatgctgcagtactgc
ttacagggtctgttccatccagctagaaaggttcgagatgtctactggaagatctacaac
tccatctacatcggctcccaggacgccctgatcgcgcagtacccgcaggtctacaacgac
gacaagaacgtgtatgtgcgctacgagctagagtacgtcctgtaa
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