Oryzias latipes (Japanese medaka): 101159787
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Entry
101159787 CDS
T02443
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101159787 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
101159787 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101159787 (lsm8)
03041 Spliceosome [BR:
ola03041
]
101159787 (lsm8)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101159787 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
101159787 (lsm8)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101159787 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
101159787
NCBI-ProteinID:
XP_004083300
UniProt:
A0A3P9H5I8
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Position
23:complement(23243859..23246558)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcgctggagagctacatcaaccgtacggtggccatcgtcacttcagacggc
aggatgatcgtgggaactctgaaaggcttcgatcagaccatcaacctcatcctggatgag
agtcacgagcgcgtcttcagctccagtcagggcgtggagcaggtggtgctgggactctac
atcgtcagaggagacaacgtagcggtgatcggtgagatcgacgaagagaccgactccacg
ctggacttggggaacatccgagccgagccgctcaactctgtggttcactga
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