Oryzias latipes (Japanese medaka): 101159890
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Entry
101159890 CDS
T02443
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101159890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101159890
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101159890
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
101159890
NCBI-ProteinID:
XP_004065764
UniProt:
H2LHQ3
LinkDB
All DBs
Position
1:complement(11134735..11142797)
Genome browser
AA seq
538 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDESETKEEDEEGAKLNTDVGAPADAQAEDAAPEH
ATGNGVASEATGETAGEDVESDSDSDDDDDDVRVTIGDIKTGAPQYTTYGTPPVNLNIKS
GSRPYGQVSSKLKGVDLDAPGNINGVPVLEVDVESFEEKPWRKPGADLSDYFNYGFNEDT
WKAYCEKQKRLRMGLDVSTVGSVTSKITVQQGRTGNEKDISSLPVHTSKTDFPSPISLYK
SAIGQVARKSSGTIDVIGGQTATISRVEGRRRHNLDGNNIQVISEHSTSDTEPAAAKIPT
FFPPGPIPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPGFPPPTGGPPPSIIPTMD
SHAGGYDGRSVPPYPFPQGAYPPPMGGGVPPPWPVMMDNTKPWDYYPRREDKREKERDRP
RERTHDREREREHSPSAVNYTSDEERYRYREYQERVYAERHRDRASREKEDRHRERRHRE
KDEGRHKSARSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASEDIGADQENQEAME
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggacaaaacgaccaccaccgatgctagcgccggggacgaggag
gaggaatggttgtatggagatgagtccgagaccaaagaggaggatgaagaaggagcaaag
ttaaacacggatgtcggtgcaccagctgatgctcaagcagaagatgctgctcctgaacat
gcaacaggaaacggagttgcgtctgaggccactggtgaaactgctggtgaggatgtagaa
agtgacagcgacagcgatgatgacgacgatgacgtccgcgttaccatcggtgacattaag
accggagcaccacaatacacgacttacggcactccacctgttaacctcaacataaagtca
ggctccagaccttatggacaggtgtcttcaaagctgaaaggggtggatcttgatgcacca
ggaaacatcaatggcgtcccggtgctggaggtggacgtggagtcctttgaagagaagccc
tggaggaagccaggagcggatctgtccgactacttcaactacggcttcaacgaggacacc
tggaaggcatactgcgagaaacagaagaggctgcgaatgggtctggacgtctcgacagtc
ggatctgtgaccagcaagatcactgtgcagcagggcaggactggcaatgagaaggacatc
tccagcttacctgttcacacgtctaagacagacttcccatctccaatcagtctgtacaag
tctgccatcggtcaggtcgccaggaaatcaagtgggaccatagatgtgattggtggacag
actgccaccatcagcagggtagaagggcggcgcagacacaatttagatggaaacaatatt
caggtgatctctgaacactcgacgtcagacactgaacccgccgctgccaagattcccacc
ttcttcccacctggaccaattcctccgaacataccaccacccccttttcttcctccaccc
ccaaatgtcagcactgcacctccactcatacccccacccagattgcccattactgtgcct
cctcctggatttcctcctccaactggtggtcctcctccttctataatccccactatggac
agccatgctggaggttatgacggccgctctgttcctccatatccatttcctcagggtgct
tatcctccacctatgggcggcggtgtccctccaccgtggcccgtgatgatggacaacacc
aagccctgggactattatccccgtcgagaggataagagggagaaggagagagacagaccc
cgggagaggacacacgaccgggagcgagagcgggagcacagcccctcagctgtgaactac
accagtgacgaggagcgttatcgctaccgtgagtaccaggagcgcgtttatgcagagcgc
caccgcgaccgggcgagcagagagaaggaggacagacaccgagagagacggcacagagag
aaggacgaggggcgccacaaatctgctcgcagcagcagcagccgtaggaggcatgacagc
gaggagggagacagccaccggaggcacaaacacaaaaagagcaagaggagcaaggagggg
aaggaggccagcgaggacatcggcgccgaccaggagaaccaggaggccatggagtag
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