Oryzias latipes (Japanese medaka): 101159985
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Entry
101159985 CDS
T02443
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101159985
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101159985
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
101159985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
START_2
Motif
Other DBs
NCBI-GeneID:
101159985
NCBI-ProteinID:
XP_023811429
LinkDB
All DBs
Position
6:complement(12945052..12999804)
Genome browser
AA seq
755 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGKELSKSSHDETVEAFRAARDPVVVQVIRRTPSGH
PHGLPQEIHVVDVCTQTDITFEHIMALAKLRPTTPPVPDVCPFLLSDSCHSLHTMEQDYF
EGTDYLSGVPAEGDRTEEYEYEEVELCRLSSQEKLGLTLCYRTDEEEDMAIYVSEVCPNS
IAANDGRIREGDRILQINGQDVKDREEAMAALFNDESRNIVLLVARPDMQLEEAWLDDEH
SEFLEQLKMEMLEEQQREEMELAVLQEDQENEQRTEDDRPSCSTVPHQRDSMKDRKPSSE
HNVLAQIQRRLSQCLRDNRNSRCTASSTRLEENDEEEEDNIETESDSYRQLLELKCQIRN
SGEYDLFYSRRSTIECSMAEQSSVQHELRLLNEELRSIELECQNIMQAHKLRKGQESPVK
GLSAPSPRGPHCEESTRGKLADINERLEKSDKDSSSAYNTAESSRSTPLAMDRSPEHSLQ
RMVSLTNQRNLCSGLAGPSVITASRAPTVGKGSSPDHSNPSETDQMPQAEDESKKKVTQC
TSQIPYFSPSHSSQQRQVNIPAHASHYQSYMQLIQQHSAVEYAQSQLSLLSICKEPQRPI
NEPKMEWKVKIRSDGTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAMSEMKMGRYW
SKEERKQHLVRAKEQRRRREFMQRSRLESLRENPQSSNEGRKEVSIIELSHKKMMKKRNK
KILDSWMTIQELMTHGAKAPEGANVNNAFLSVTTV
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcactttacagaagcgagaggaacactacaagctactctatgag
attgcacaggttaatgggaaggagttgtccaagtccagccacgatgagactgtggaggcc
tttcgggctgccagagaccccgttgtggtgcaggtcatcaggcgtacccccagcggccac
ccacatggcctccctcaggaaatccatgtggtggacgtgtgcactcagaccgacatcacc
tttgaacacattatggctctggcaaagctccgacctacaacccccccagtgcctgacgtc
tgtcccttcctgctctctgatagctgtcattcacttcatacaatggagcaggattacttt
gaggggacagactacctttcaggtgttccagctgaaggagaccggacagaggaatatgag
tatgaagaagttgaactttgccgactcagcagtcaagagaaattggggttgactctttgc
tacaggacagatgaagaagaggacatggccatttatgtcagtgaggtctgtccaaacagc
attgctgccaatgatggacggatccgagagggggatcgcattttacagattaatggccaa
gatgtcaaagacagagaggaagcgatggcggcactcttcaacgacgaaagtaggaacatc
gtcctcctagttgccagacctgacatgcagctggaggaggcctggctggacgacgagcac
agtgagttcctggagcagctcaagatggaaatgttggaggagcagcagagagaggagatg
gagttagctgtgctacaggaggaccaggagaacgagcagagaactgaagacgacaggccc
tcctgctccacagtgcctcatcaaagggacagtatgaaagacagaaaaccaagttcagag
cataacgttttggcgcaaattcagagacgcctgtcccagtgcctcagagacaatcggaac
tctcgctgcactgccagttccacaagactggaggaaaacgacgaggaagaggaggacaac
atagaaactgagagtgacagttatcggcaactactggagctaaaatgtcagatacgcaac
agcggcgagtatgacctcttctacagccggcgcagcaccatcgagtgcagtatggcagag
cagagcagcgtacagcacgagctccgcctgctcaatgaggagctgcgcagcatcgagctt
gagtgtcagaacatcatgcaggctcataagcttcggaagggccaggagtctccagtaaag
ggcctttccgcgccttcccccaggggtccacactgtgaagagtccacaaggggcaagctg
gctgacattaatgaaaggctggagaaatcggacaaggacagctccagtgcctataacact
gcagagagttcgcggagtactcctctggcgatggatcgctcccccgagcactcgctccag
agaatggtgagcctcactaaccagagaaacctgtgcagtggacttgcaggtccctcagtc
attactgcaagtcgtgctccaacagtggggaagggcagcagccccgaccacagcaatcct
tcagagacagaccagatgcctcaggctgaagacgaaagcaaaaagaaagttacacaatgt
acctctcagattccttacttctctccttctcacagttcccagcaaaggcaggttaacatc
ccggctcatgccagccattaccagagctacatgcagctaatccagcaacactcagctgtg
gaatacgctcagagccaactcagcctccttagcatttgtaaagagcctcagcgacctatt
aatgagcccaaaatggagtggaaggtcaaaatcagaagcgacggcactcgttacatcacc
aagaggcctgtaagagacaagatcctgagggagcgagccttaaagattaaagaagaacgc
agtggcggcatgactacggatgatgatgccatgagtgaaatgaagatggggaggtactgg
agtaaagaggaaagaaagcagcaccttgtcagggcaaaagagcagaggaggaggcgggaa
ttcatgcagcgtagtcgactggaaagcttgagggaaaacccgcagagcagcaatgaaggt
cgcaaggaagtcagcatcatagagctcagccacaaaaagatgatgaagaaacgcaacaag
aagatcttggatagctggatgacgatccaggagctgatgactcacggtgcgaaggcgccc
gagggtgcaaacgtgaacaatgccttcctttcagtcactactgtataa
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