Oryzias latipes (Japanese medaka): 101159989
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Entry
101159989 CDS
T02443
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03250
Viral life cycle - HIV-1
ola04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101159989 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
101159989 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101159989 (samhd1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101159989 (samhd1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
101159989
NCBI-ProteinID:
XP_004070541
UniProt:
A0A3B3I2S5
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All DBs
Position
7:14693405..14702675
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AA seq
627 aa
AA seq
DB search
MENRKRPLDSVLSSNDRFKTPEKKRLSPVLLPGSDLLQWGVEETCQFLRKEGLGEWENAF
RAQRITGVGLRYLNDADLKTIGIECLGVRLRILHSLRKLWQIDTEANKVFNDPIHGHVEL
HPLLIKIIDTPQFQRLRNIKQLGGTYFVFPGASHNRFEHSIGVGYLAGQLVQALNERQPE
LLICHRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKACPQVNWKHETASLDMFDHLVESN
GLKVVMEEHGLVLPEDLDFIKEQIAGPLSTQTPGQKWPYKGRPEDKSFLYEIVANKRNGI
DVDKWDYFARDCYHLGIQNNFDYQRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKVCNIIETMITEAFLKADPYIQIEGTEGKMFTLSTAIDDMVAYTKLTDYVFE
QILNSSSSELREAREILHNIVCRRLYKCLGQTQPDQTVTVSQETIKIWEQELSESTPQNS
SSAVSLQPQDFIVNVIVMDYGMKEKNPINNVRFYCKNDPNKAIQIRKNQVSKLLPEHFAE
QLIRVYFKKTDNESLEAAKKHFIQWCMNKNFSKPQDGDIIAPELTPLKASWCNNNEGENS
DEANPTERNKNLVNGQKKIKTQLFKKK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaaagcgaccgctggactccgtgttgagctccaacgaccgcttcaaaacc
ccagagaagaagaggctgtcgccggtcctgctgccggggtctgacctgctgcagtgggga
gtggaggaaacctgtcagtttctgcgaaaggaaggtctcggggaatgggagaatgcattt
agagcacaaagaatcacaggcgttggactgcgctatctcaatgatgcagacctgaaaaca
ataggcatagagtgtcttggtgtccgcctgcgcatcctgcacagcctcaggaaactctgg
caaatagacacagaggcgaacaaggtgttcaatgaccccattcacggccatgtggagttg
caccccctcctcatcaaaattattgacacgccacagttccagagactacgcaatatcaag
cagcttggagggacatactttgttttccctggagcatcccacaaccgctttgaacacagt
attggtgtgggttatttggctggacaacttgttcaggctctaaatgaaagacagcctgaa
ctgctgatctgtcatagagacatcctatgtgtgcagattgcagggctctgccatgatctg
ggacacggacccttttcccacatgtttgatggcatgtttatccctaaagcctgtccacaa
gttaattggaagcatgagacagcatctctggacatgtttgatcatctcgtggagagcaat
ggcctgaaggttgtgatggaggagcatggcctcgtgcttccagaggatctggatttcata
aaagaacagattgcaggaccactcagcactcaaactccaggccagaagtggccgtacaaa
ggccgacctgaagacaagtccttcctctatgagattgtagccaacaaaaggaatggcatt
gatgtagataaatgggactactttgccagggactgttaccatttgggcattcagaacaac
tttgactatcagcgattccttaaatttgcccgggtgtgtgaggttgacgggcagaagcac
atctgcaccagagacaaggaagttggaaatctgtatgacatgttccacaccagaaactgt
ctgcacagacgagcttaccagcacaaagtgtgcaatatcattgagaccatgatcactgag
gcctttttaaaagcagacccatacatacaaattgaaggtactgaggggaagatgttcact
ctctccacagctattgatgacatggtggcctacaccaaactaacagattatgtgtttgaa
cagatcctcaactcctcctcttcagagctccgtgaggcgagggagatactgcacaacatc
gtctgcagacgcctctacaaatgtctgggacaaactcagccagaccaaaccgtgactgtc
agccaggagaccatcaagatctgggagcaagagttatctgaatccactcctcagaatagc
agctctgctgtcagtctgcaaccacaggactttatcgtcaatgtcattgttatggactat
gggatgaaggagaaaaaccccatcaacaatgtgcgattctactgcaagaatgacccaaat
aaagccatccagatccgcaaaaaccaggtgtctaaacttcttccggagcattttgctgag
cagctgatcagagtgtacttcaaaaagacggacaacgagagtctggaggcggccaagaag
cactttattcagtggtgcatgaacaagaacttctcaaagcctcaggacggagacataata
gcccccgagctgactcctcttaaagccagctggtgcaacaacaacgaaggcgagaacagc
gacgaggcgaacccaacagaaagaaacaagaatcttgtgaacggacaaaagaagatcaaa
actcagctgtttaagaaaaagtga
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