KEGG   Oryzias latipes (Japanese medaka): 101160328
Entry
101160328         CDS       T02443                                 
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101160328 (exosc7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101160328 (exosc7)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     101160328 (exosc7)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     101160328 (exosc7)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C DDE_Tnp_4
Other DBs
NCBI-GeneID: 101160328
NCBI-ProteinID: XP_004073829
UniProt: H2LA89
LinkDB
Position
11:complement(5727527..5730687)
AA seq 291 aa
MATVKVSEAEKVYILHGIRDDLRVDGRSCEDYRHMEVETDVVSNTDGSARVSLGHTAVLV
GIKAEIGKPRPLVPDEGYLEFFVDCSANATPEFEGRGGEELGIELSNTLYRVFNNKNSID
LKGLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPRVHMSSDDEGGKEV
ELSDDPFDCVRLSVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIIAVTHRGTVTCVK
KVGGGSLDPESIFEMTEAGKRVGKALHAPLMKLLQQEESLGKKREKVGFLG
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcaacagttaaagttagcgaggctgaaaaggtgtacattctacacggaataagagat
gatttacgtgtggatggaagaagctgtgaggactaccgacacatggaagtggagacggat
gtggtctcaaacactgatggatctgccagagtctccctgggacacaccgccgtcctggtt
gggattaaagcagaaataggaaaaccaagaccactggttccagatgaaggatacctggag
ttctttgttgattgctctgccaacgccacccccgagtttgaaggcagaggaggtgaggag
ctagggatcgagctgagcaacactctctacagagtcttcaacaacaagaacagcatagac
ctgaagggcctctgcatcagtgctggggagcactgctgggttctctatgtagatgtcctg
ctgctgcagtgtgacggcaacctgtacgacgccatctctgtcgccatcaaagcggcactc
ttcaacacaaaaatccctagagtccacatgtcgtcggacgatgaaggcgggaaggaggtg
gagctttcagacgacccgtttgactgcgtgaggctgagcgtggaaaatgttccctgcatc
gtgacgctgtgtaaggtgggccacagacacgtagtggacgcgactctgcaggagaaggcg
tgctcggtggcgagcctcatcatcgccgtcacgcacaggggcacggtgacttgcgtcaaa
aaggtgggcggcgggagcctggatccagagagcatcttcgaaatgacagaggcgggcaaa
cgagtcgggaaagctcttcacgctccactcatgaagctgctgcagcaggaagagagtctg
ggaaagaagagagaaaaagttggctttcttggctga

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