Oryzias latipes (Japanese medaka): 101160328
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Entry
101160328 CDS
T02443
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101160328 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101160328 (exosc7)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101160328 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
101160328 (exosc7)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DDE_Tnp_4
Motif
Other DBs
NCBI-GeneID:
101160328
NCBI-ProteinID:
XP_004073829
UniProt:
H2LA89
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Position
11:complement(5727527..5730687)
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AA seq
291 aa
AA seq
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MATVKVSEAEKVYILHGIRDDLRVDGRSCEDYRHMEVETDVVSNTDGSARVSLGHTAVLV
GIKAEIGKPRPLVPDEGYLEFFVDCSANATPEFEGRGGEELGIELSNTLYRVFNNKNSID
LKGLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPRVHMSSDDEGGKEV
ELSDDPFDCVRLSVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIIAVTHRGTVTCVK
KVGGGSLDPESIFEMTEAGKRVGKALHAPLMKLLQQEESLGKKREKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagttaaagttagcgaggctgaaaaggtgtacattctacacggaataagagat
gatttacgtgtggatggaagaagctgtgaggactaccgacacatggaagtggagacggat
gtggtctcaaacactgatggatctgccagagtctccctgggacacaccgccgtcctggtt
gggattaaagcagaaataggaaaaccaagaccactggttccagatgaaggatacctggag
ttctttgttgattgctctgccaacgccacccccgagtttgaaggcagaggaggtgaggag
ctagggatcgagctgagcaacactctctacagagtcttcaacaacaagaacagcatagac
ctgaagggcctctgcatcagtgctggggagcactgctgggttctctatgtagatgtcctg
ctgctgcagtgtgacggcaacctgtacgacgccatctctgtcgccatcaaagcggcactc
ttcaacacaaaaatccctagagtccacatgtcgtcggacgatgaaggcgggaaggaggtg
gagctttcagacgacccgtttgactgcgtgaggctgagcgtggaaaatgttccctgcatc
gtgacgctgtgtaaggtgggccacagacacgtagtggacgcgactctgcaggagaaggcg
tgctcggtggcgagcctcatcatcgccgtcacgcacaggggcacggtgacttgcgtcaaa
aaggtgggcggcgggagcctggatccagagagcatcttcgaaatgacagaggcgggcaaa
cgagtcgggaaagctcttcacgctccactcatgaagctgctgcagcaggaagagagtctg
ggaaagaagagagaaaaagttggctttcttggctga
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